API for korsunskylab/gagarin
(spat)ial genomics analysis (t)ools (ula)
| Global functions | |
|---|---|
| align_cells_nuclei | Source code |
| compute_edge_scores | Source code |
| dgCMat_to_pairs | Source code Source code |
| dgCMat_to_pairs_cpp | Source code Source code |
| do_mesmer | Source code |
| do_segment | Source code |
| extract_cells | Source code |
| getSpatialNeighbors | Source code Source code |
| get_idx | Source code |
| get_idx_cpp | Source code |
| get_overlapping_cells | Source code |
| infer_polygon | Source code |
| initialize_grid | Source code |
| readMM | Source code |
| read_subimgs | Source code |
| register_labels | Source code |
| register_labels_multi | Source code |
| seg_img_to_sf | Source code |
| spatula | Man page |
| split_grid | Source code |
| split_tx | Source code |
| st_aggregate_pts_shapes | Source code |
| st_assign_pt | Source code |
| st_assign_pt.data.frame | Source code |
| st_assign_pt.data.table | Source code |
| st_assign_pt.default | Source code |
| st_assign_pt.sf | Source code |
| st_bbox_polygon | Source code |
| st_make_neighborhoods | Source code |
| st_make_neighborhoods_multi | Source code |
| st_rectangle | Source code |
| trace_outline | Source code |
| triplets_to_pairs | Source code Source code |
| tx_to_counts | Source code |
| writeMM | Source code |
