Man pages for krisrs1128/BIRSBIO2020.scProteomics.embeddings
Targeted Proteomics Embedding Analysis (BIRS 2020)
| avg_dists | Average Pairwise Distance within Subgraphs |
| background_prop | Proportion of image that's Background |
| cell_type | Helper to get Cell Type |
| data_list | Wrapper to get SCE data |
| download_data | Download Data for Experiments |
| entropies | Cluster Entropy of Subgraphs |
| extract_graph | Extract a KNN Graph from Polygons |
| fit_wrapper | Helper to Fit Models |
| generate_model | Multitask Regression Model |
| graph_stats_cell | Apply fun to Graph Neighborhoods |
| linked_views | Interactive Linked_Viewss |
| load_mibi | Load MIBI-ToF into List |
| loop_stats | Wrapper for Local Statistics |
| plot_fits | Helper to Plot Model Results |
| polygonize | Polygonize a Raster Image |
| raster_stats_cell | Apply fun to Local Neighborhoods |
| sample_proportions | Division of Samples into Clusters |
| spatial_subsample | Subsample Rasters |
| subgraphs | All Subgraphs of a Graph |
| type_props | Proportion of Cell Types |
