Files in labbcb/Rqc

Quality Control Tool for High-Throughput Sequencing Data

R/RcppExports.R R/Rqc-package.R R/RqcResultSet.R R/checkpoint.R R/detectFileFormat.R R/rqc.R R/rqcCycleAverageQualityCalc.R R/rqcCycleAverageQualityPcaCalc.R R/rqcCycleAverageQualityPcaPlot.R R/rqcCycleAverageQualityPlot.R R/rqcCycleBaseCallsCalc.R R/rqcCycleBaseCallsLinePlot.R R/rqcCycleBaseCallsPlot.R R/rqcCycleGCCalc.R R/rqcCycleGCPlot.R R/rqcCycleQualityBoxCalc.R R/rqcCycleQualityBoxPlot.R R/rqcCycleQualityCalc.R R/rqcCycleQualityPlot.R R/rqcFileHeatmap.R R/rqcGroupCycleAverageQualityCalc.R R/rqcGroupCycleAverageQualityPlot.R R/rqcQA-methods.R R/rqcReadFrquencyCalc.R R/rqcReadFrquencyPlot.R R/rqcReadQualityBoxCalc.R R/rqcReadQualityBoxPlot.R R/rqcReadQualityCalc.R R/rqcReadQualityPlot.R R/rqcReadWidthCalc.R R/rqcReadWidthPlot.R R/rqcReport.R R/rqcShinyReport.R R/stats4trim.R R/subsetByGroup.R R/subsetByPair.R R/utils.R README.md inst/templates/rqc_report.Rmd inst/templates/rqc_report_noX11.Rmd man/Rqc-package.Rd man/RqcResultSet-class.Rd man/checkpoint.Rd man/detectFileFormat.Rd man/fromRRDNA.Rd man/matdist.Rd man/rqc.Rd man/rqcCycleAverageQualityPcaPlot.Rd man/rqcCycleAverageQualityPlot.Rd man/rqcCycleBaseCallsPlot.Rd man/rqcCycleGCPlot.Rd man/rqcCycleQualityBoxPlot.Rd man/rqcCycleQualityPlot.Rd man/rqcFileHeatmap.Rd man/rqcGroupCycleAverageQualityPlot.Rd man/rqcQA.Rd man/rqcReadFrequencyPlot.Rd man/rqcReadQualityBoxPlot.Rd man/rqcReadQualityPlot.Rd man/rqcReadWidthPlot.Rd man/rqcReport.Rd man/rqcShinyReport.Rd man/stats4trim.Rd man/subsetByGroup.Rd man/subsetByPair.Rd man/toRRDNA.Rd tests/testthat.R tests/testthat/test-rqcQA.R tests/testthat/test_merge.R tests/testthat/test_rrdna.R vignettes/Rqc.Rmd