Files in larssnip/microclass
Tools for taxonomic classification of prokaryotes
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/KmerCount.R
R/RcppExports.R
R/blast.R
R/datasets.R
R/dmpfiles.R
R/extractor.R
R/krkFun.R
R/microclass-package.R
R/microclr.R
R/multinom.R
R/ncbitree.R
R/rdpClassifier.R
R/taxMachine.R
R/zzz.R
Readme.Rmd
Readme.md
data/NCBI_16S.fasta
data/small.16S.rda
inst/extdata/norm.models.rda
inst/extdata/rprob.mat.1400.rda
inst/extdata/rprob.mat.150.rda
inst/extdata/rprob.mat.300.rda
inst/extdata/rprob.mat.500.rda
inst/extdata/std.frame.rda
man/KmerCount.Rd
man/blastClassify16S.Rd
man/blastDbase16S.Rd
man/bracken_read_report.Rd
man/branch_list2qiime.Rd
man/branch_list2table.Rd
man/branch_prune.Rd
man/branch_retrieve.Rd
man/branch_taxid2name.Rd
man/clr.Rd
man/getDomain.Rd
man/kraken2_read_report.Rd
man/kraken2_read_table.Rd
man/microclass-package.Rd
man/multinomClassify.Rd
man/multinomTrain.Rd
man/rdpClassify.Rd
man/rdpTrain.Rd
man/read_names_dmp.Rd
man/read_nodes_dmp.Rd
man/setParallel.Rd
man/small.16S.Rd
man/subset_clade.Rd
man/subset_tree.Rd
man/taxMachine.Rd
microclass.Rproj
src/KmerCount.cpp
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/charToInt.cpp
src/multinomClassify.cpp
src/multinomTrainCpp.cpp
src/pow4int.cpp
src/pow4inthead.h
vignettes/intro.R
vignettes/intro.Rmd
vignettes/intro.html
