Files in larssnip/micropan
Microbial Pan-Genome Analysis
DESCRIPTION
NAMESPACE
R/bclust.R
R/bdist.R
R/binomix.R
R/blasting.R
R/domainclust.R
R/entrez.R
R/extern.R
R/extractPanGenes.R
R/genomedistances.R
R/hmmer3.R
R/micropan.R
R/panmat.R
R/panpca.R
R/panprep.R
R/powerlaw.R
R/rarefaction.R
R/xmpl.R
R/xz.R
Readme.Rmd
Readme.md
Readme_files/figure-gfm/unnamed-chunk-10-1.png
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data/xmpl.bclst.rda
data/xmpl.bdist.rda
data/xmpl.panmat.rda
inst/extdata/GID1_vs_GID1_.txt.xz
inst/extdata/GID1_vs_microfam.hmm.txt.xz
inst/extdata/GID2_vs_GID1_.txt.xz
inst/extdata/GID2_vs_GID2_.txt.xz
inst/extdata/GID2_vs_microfam.hmm.txt.xz
inst/extdata/GID3_vs_GID1_.txt.xz
inst/extdata/GID3_vs_GID2_.txt.xz
inst/extdata/GID3_vs_GID3_.txt.xz
inst/extdata/GID3_vs_microfam.hmm.txt.xz
inst/extdata/microfam.hmm.h3f.xz
inst/extdata/microfam.hmm.h3i.xz
inst/extdata/microfam.hmm.h3m.xz
inst/extdata/microfam.hmm.h3p.xz
inst/extdata/xmpl.faa.xz
inst/extdata/xmpl_GID1.faa.xz
inst/extdata/xmpl_GID2.faa.xz
inst/extdata/xmpl_GID3.faa.xz
man/bClust.Rd
man/bDist.Rd
man/binomixEstimate.Rd
man/blastpAllAll.Rd
man/chao.Rd
man/dClust.Rd
man/distJaccard.Rd
man/distManhattan.Rd
man/entrezDownload.Rd
man/extractPanGenes.Rd
man/fluidity.Rd
man/geneFamilies2fasta.Rd
man/geneWeights.Rd
man/getAccessions.Rd
man/heaps.Rd
man/hmmerCleanOverlap.Rd
man/hmmerScan.Rd
man/isOrtholog.Rd
man/micropan.Rd
man/panMatrix.Rd
man/panPca.Rd
man/panPrep.Rd
man/rarefaction.Rd
man/readBlastSelf.Rd
man/readHmmer.Rd
man/xmpl.Rd
man/xz.Rd
vignettes/vignette-concordance.tex
vignettes/vignette.Rnw
vignettes/vignette.aux
vignettes/vignette.log
vignettes/vignette.pdf
vignettes/vignette.tex
