Man pages for laurafancello/CCs4prot
Handle Ambiguity of Protein Identifications from Shotgun Proteomics
| cc_composition | Get peptides and peptide-to-protein mappings for each... |
| cc_stats | Provide statistics on the CCs size |
| get_adj_matrix | Generate adjacency matrix |
| get_cc | Generate graph and calculate its connected components |
| peptide_stats | Calculate percentage of shared vs specific peptides |
| plot_cc | Plot peptide-to-protein mapping graph |
| read_inc_matrix | Read incidence matrix of proteomic identifications |
| reduce_inc_matrix | Reduce size of incidence matrix for downstream analyses |
| transcriptome_filter | Perform transcriptome-informed post-hoc filtering |
