Files in lawremi/biovizBase
Basic graphic utilities for visualization of genomic data.
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllGenerics.R
R/addStepping-method.R
R/aes.R
R/biovizBase-package.R
R/color.R
R/coverage.R
R/crunch-method.R
R/facets-method.R
R/getFragLength-method.R
R/ideogram.R
R/labs.R
R/maxGap-method.R
R/mold-method.R
R/original.R
R/pileup.R
R/scale.R
R/shrinkageFun-method.R
R/spliceSummary-method.R
R/transform.R
R/utils.R
R/zzz.R
data/CRC.rda
data/crc1.GeRL.rda
data/darned_hg19_subset500.rda
data/genesymbol.rda
data/hg19Ideogram.rda
data/hg19IdeogramCyto.rda
data/ideo.rda
data/ideoCyto.rda
inst/examples/color.R
inst/examples/data-gen.R
inst/examples/test.R
inst/extdata/17-1409-CEU-brca1.vcf.bgz
inst/extdata/17-1409-CEU-brca1.vcf.bgz.tbi
inst/extdata/SRR027894subRBM17.bam
inst/extdata/SRR027894subRBM17.bam.bai
inst/extdata/crc-rearrangment.csv
inst/extdata/crc1-missense.csv
inst/extdata/plink.assoc.sub.txt
inst/extdata/wg-brca1.sorted.bam
inst/extdata/wg-brca1.sorted.bam.bai
inst/unitTests/test_ensdb.R
man/CRC.Rd
man/GCcontent.Rd
man/addStepping-method.Rd
man/aes-utils.Rd
man/biovizBase-package.Rd
man/colorBlindSafePal.Rd
man/containLetters.Rd
man/crc1.GeRL.Rd
man/crunch-method.Rd
man/darned_hg19_subset500.Rd
man/estimateCoverage-method.Rd
man/flatGrl.Rd
man/genesymbol.Rd
man/getBioColor.Rd
man/getFormalNames.Rd
man/getGaps.Rd
man/getIdeoGR.Rd
man/getIdeogram.Rd
man/getScale.Rd
man/hg19Ideogram.Rd
man/hg19IdeogramCyto.Rd
man/ideo.Rd
man/ideoCyto.Rd
man/isIdeogram.Rd
man/isMatchedWithModel.Rd
man/isSimpleIdeogram.Rd
man/labs.Rd
man/maxGap-method.Rd
man/mold-method.Rd
man/pileupAsGRanges.Rd
man/pileupGRangesAsVariantTable.Rd
man/plotColorLegend.Rd
man/scale.Rd
man/showColor.Rd
man/shrinkageFun-method.Rd
man/splitByFacets-method.Rd
man/strip_formula_dots.Rd
man/subsetArgsByFormals.Rd
man/transform.Rd
man/transformGRangesForEvenSpace.Rd
src/R_init_biovizBase.c
src/bin_offsets.c
src/bin_offsets.h
tests/runTests.R
vignettes/intro-shrink-single.pdf
vignettes/intro-shrinkageFun.pdf
vignettes/intro.Rnw
