Man pages for lawremi/biovizBase
Basic graphic utilities for visualization of genomic data.
| addStepping-method | Adding disjoint levels to a GenomicRanges object |
| aes-utils | Utils for parsing (un)evaluated arguments |
| biovizBase-package | biovizBase is a package which provides utilities and color... |
| colorBlindSafePal | Color blind safe palette generator |
| containLetters | Checking if string contains letters or not |
| CRC | CRC |
| crc1.GeRL | crc1.GeRL |
| crunch-method | Fetching GRanges from various data source |
| darned_hg19_subset500 | Subset of RNA editing sites in hg19... |
| estimateCoverage-method | Estimation of Coverage |
| flatGrl | Transform GRangesList to GRanges |
| GCcontent | GC content computation for BSgenome |
| genesymbol | Gene symbols with position... |
| getBioColor | Color scheme getter for biological data |
| getFormalNames | Get formals from functions |
| getGaps | get gaps for a stepping transformed GRanges object |
| getIdeoGR | Get ideogram information |
| getIdeogram | Get ideogram. |
| getScale | Get scale information from a GRanges |
| hg19Ideogram | Hg19 ideogram without cytoband information... |
| hg19IdeogramCyto | Hg19 ideogram with cytoband information... |
| ideo | ideogram without cytoband information |
| ideoCyto | ideogram with cytoband information |
| isIdeogram | Ideogram checking |
| isMatchedWithModel | Utils for Splicing Summary |
| isSimpleIdeogram | Simple ideogram checking |
| labs | parse x and y label information from a specific object |
| maxGap-method | Estimated max gaps |
| mold-method | mold data into data.frame |
| pileupAsGRanges | Summarize reads for certain region |
| pileupGRangesAsVariantTable | Mismatch summary |
| plotColorLegend | Show colors |
| scale | get x scale breaks and labels |
| showColor | Show colors |
| shrinkageFun-method | Shrinkage function |
| splitByFacets-method | split a GRanges by formula |
| strip_formula_dots | strip dots around a formula variables |
| subsetArgsByFormals | Subset list of arguments by functions |
| transform | Transform GRanges to different coordinates and layout |
| transformGRangesForEvenSpace | Transform GRanges with New Coordinates |
