Files in lcrawlab/mvMAPIT
Multivariate Genome Wide Marginal Epistasis Test
.Rbuildignore
.github/CODEOWNERS
.github/workflows/check-standard.yaml
.github/workflows/docker-image.yml
.github/workflows/pkgdown.yaml
.github/workflows/super-linter.yaml
.gitignore
DESCRIPTION
Dockerfile
LICENSE.md
NAMESPACE
NEWS.md
R/MAPIT.R
R/RcppExports.R
R/binary_to_liability.R
R/catch-routine-registration.R
R/combine_pvalues.R
R/mapit_pvalues.R
R/mvmapit_data.R
R/phillips_data.R
R/simulate_data.R
R/simulated_data.R
README.md
_pkgdown.yml
bin/build_container.sh
bin/run_container.sh
data-raw/genotype_data.R
data-raw/mvmapit_on_simulated_data.R
data-raw/simulate_epistasis.R
data/mvmapit_data.rda
data/phillips_data.rda
data/simulated_data.rda
man/binary_to_liability.Rd
man/cauchy_combined.Rd
man/figures/logo.png
man/fishers_combined.Rd
man/harmonic_combined.Rd
man/mvmapit.Rd
man/mvmapit_data.Rd
man/phillips_data.Rd
man/simulate_traits.Rd
man/simulated_data.Rd
src/MAPIT.cpp
src/MAPIT.h
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/gsm/gsm.cpp
src/gsm/gsm.h
src/logging/log.cpp
src/logging/log.h
src/mapit/davies.cpp
src/mapit/davies.h
src/mapit/normal.cpp
src/mapit/normal.h
src/mapit/projection.cpp
src/mapit/projection.h
src/mapit/pve.cpp
src/mapit/pve.h
src/mapit/util.cpp
src/mapit/util.h
src/mqs/mqs.cpp
src/mqs/mqs.h
src/tests/test-compare-to-original-mapit.cpp
src/tests/test-davies.cpp
src/tests/test-gsm.cpp
src/tests/test-log.cpp
src/tests/test-mqs.cpp
src/tests/test-normal.cpp
src/tests/test-projection.cpp
src/tests/test-pve.cpp
src/tests/test-runner.cpp
src/tests/test-util.cpp
tests/quick-run.R
tests/testthat.R
tests/testthat/compare-to-original-mapit.R
tests/testthat/original_MAPIT.rds
tests/testthat/test-binary_to_liability.R
tests/testthat/test-combine_pvalues.R
tests/testthat/test-cpp.R
tests/testthat/test-mapit_pvalues.R
tests/testthat/test-mvmapit-argument-parsing.R
tests/testthat/test-mvmapit-executes-without-error.R
tests/testthat/test-mvmapit-return-is-labeled-informatively.R
tests/testthat/test-mvmapit-with-identical-phenotypes.R
tests/testthat/test-pvalue-names-from-phenotype-names.R
tests/testthat/test-simulate_data.R
tests/testthat/test-variants-not-in-variantIndex-produce-NA.R
tests/testthat/test-zero-variance-function-on-rows.R
vignettes/.gitignore
vignettes/mvMAPIT.Rmd
vignettes/simulate_traits.png
vignettes/study-compare-p-value-combine-methods.Rmd
vignettes/study-phillips-bnabs.Rmd
vignettes/study-wtccc-mice.Rmd
vignettes/tutorial-docker-mvmapit.Rmd
vignettes/tutorial-lt-mapit.Rmd
vignettes/tutorial-simulations.Rmd
