API for lculibrk/Ploidetect-package
Interpretable detection of tumour purity, ploidy, copy number variation and loss of heterozygosity
| Global functions | |
|---|---|
| callbreakpoints | Source code |
| compressdata | Source code |
| flip_merged_mafs | Source code |
| linearTransform | Source code |
| merge_mafs | Source code |
| modelbuilder_iterative | Source code |
| optimizesmoothing | Source code |
| peakcaller | Source code |
| ploidetect | Man page Source code |
| ploidetect_filter_xdists | Source code |
| ploidetect_fineCNAs | Source code |
| ploidetect_loh | Source code |
| ploidetect_preprocess | Source code |
| ploidetect_processallpeaks | Source code |
| ploidetect_roughmodels | Source code |
| ploidetect_segmentator | Source code |
| ploidetect_transform | Source code |
| read_ploidetect | Source code |
| runiterativecompression | Source code |
| testMAF | Source code |
| unmerge_mafs | Source code |
