Man pages for leondap/recluster
Ordination Methods for the Analysis of Beta-Diversity Indices
| biodecrypt | An algorithm to attribute unidentified occurrence data based... |
| biodecrypt.cross | Perform a cross validation analysis to test the attribution... |
| biodecrypt.optimise | Comparing the values obtained by biodecrypt.wrap, it... |
| biodecrypt.plot | Plotting biodecrypt and biodecrypt.cross results. |
| biodecrypt.view | A function to view the hulls and manually adjust alpha values... |
| biodecrypt.wrap | Wraps the biodecrypt.cross analysis to compare the... |
| dataisl | West Mediterranean island butterflies provided with the... |
| datamod | Virtual island faunas provided with the package recluster |
| multiboot | A multiboot result obtained with the dataisl dataset. |
| recluster | Ordination methods for biodiversity patterns. |
| recluster.boot | Bootstrap nodes of consensus trees |
| recluster.check | An internal workaround for the new ape package |
| recluster.col | Projecting a two dimensional plot in RGB space |
| recluster.cons | Consensus tree among re-sampled trees |
| recluster.dist | Compute a dissimilarity matrix using a battery of... |
| recluster.expl | Computes the dissimilarity contained in a distance matrix... |
| recluster.expl.diss | Cuts a phylogenetic tree and provides cluster membership of... |
| recluster.fst | Compute some indexes of genetic differentiation |
| recluster.fst.pair | Compute pairwise indexes of genetic differentiation among... |
| recluster.group.col | Computes mean coordinate values and RGB colours. |
| recluster.hist | Histogram of dissimilarity with tied and zero values |
| recluster.identify.nodes | Evaluating solutions in multiscale bootstrap |
| recluster.line | Identifies a line in a configuration and computes its... |
| recluster.multi | Multiscale bootstrap based on a consensus tree |
| recluster.node.strength | Evaluating order row bias in a cluster |
| recluster.plot | A plotter for recluster bootstrapped objects |
| recluster.plot.col | Plotting data in RGB space |
| recluster.plot.matrix | Plot the values of the cells of a matrix in grey scale |
| recluster.plot.pie | Plotting pies with RGB colours on a custom coordinate space |
| recluster.plot.sites.col | Plotting RGB dots on a custom coordinate space |
| recluster.procrustes | Computes a procrustes analysis between two matrices even if... |
| recluster.region | A clustering method based on continuous consensus among... |
| recluster.rotate | Rotates a bidimensional configuration according to a line |
| recluster.test.dist | Test variation lost by a bidimensional configuration when the... |
| treebut | Phylogenetic tree for the butterfly species included in... |
| treemod | Hypothetical phylogenetic tree for the virtual island faunas... |
