Files in liamlachs/SizeExtractR
Extracts object size metrics from scaled images analysed in SizeExtractR ImageJ protocols
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/Add_ROILabelCodeVars.R
R/Build_Uncalibrated_Dataset.R
R/Calibrate_Database.R
R/CheckSet_DirecVars.R
R/CheckSet_ROILabelCodeVars.R
R/Check_ROI_Types.R
R/Database.R
R/Database.ROILabelCode.R
R/Database.cal.R
R/Database.groups.R
R/Full_SizeExtractR_Workflow.R
R/Label.Translator.R
R/Plot_Size_Frequency.R
R/SizeOnly_Database.R
R/varnames.R
README.Rmd
README.md
SizeExtractR.Rproj
data/Database.RData
data/Database.ROILabelCode.RData
data/Database.cal.RData
data/Database.groups.RData
data/Label.Translator.RData
data/varnames.RData
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7003_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7005_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7016_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7019_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7029_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7032_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7047_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7054_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7058_AREAs.txt
inst/Data_postImageJ/2016_bleaching/North/ImageJ_Output/IMG_7061_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6137_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6138_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6145_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6152_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6153_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6154_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6161_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6165_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6179_AREAs.txt
inst/Data_postImageJ/2016_bleaching/Northwest/ImageJ_Output/IMG_6209_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5141_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5143_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5144_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5149_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5150_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5151_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5153_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5154_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5164_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/North/ImageJ_Output/IMG_5168_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4152_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4157_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4170_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4179_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4180_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4181_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4182_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4191_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4204_AREAs.txt
inst/Data_postImageJ/2016_post-bleaching/Northwest/ImageJ_Output/IMG_4208_AREAs.txt
inst/Data_postImageJ/ROI_Labels.csv
inst/ImageJ_macro_code.zip
inst/Size-Frequencies-Coral-Example.png
inst/TextFiles/2018/Adigit_C1_N1_P1.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P10.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P2.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P3.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P4.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P5.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P6.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P7.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P8.jpg_AREAs.txt
inst/TextFiles/2018/Adigit_C1_N1_P9.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P1.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P10.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P2.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P3.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P4.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P5.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P6.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P7.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P8.jpg_AREAs.txt
inst/TextFiles/2019/Adigit_19_C11_N1_P9.jpg_AREAs.txt
inst/TextFiles/ROI_Labels.csv
inst/Timed_Image_Analyses_txt_only.zip
man/Add_ROILabelCodeVars.Rd
man/Build_Uncalibrated_Dataset.Rd
man/Calibrate_Database.Rd
man/CheckSet_DirecVars.Rd
man/CheckSet_ROILabelCodeVars.Rd
man/Check_ROI_Types.Rd
man/Database.ROILabelCode.Rd
man/Database.Rd
man/Database.cal.Rd
man/Database.groups.Rd
man/Full_SizeExtractR_Workflow.Rd
man/Label.Translator.Rd
man/Plot_Size_Frequency.Rd
man/SizeOnly_Database.Rd
man/varnames.Rd
vignettes/.gitignore
vignettes/Database.Vignette.csv
vignettes/Example_Annotations.jpg
vignettes/Example_Image.jpg
vignettes/Interactive_instructions/Interactive_Step_1.JPG
vignettes/Interactive_instructions/Interactive_Step_2.JPG
vignettes/Interactive_instructions/Interactive_Step_3.JPG
vignettes/Interactive_instructions/Interactive_Step_4.JPG
vignettes/Interactive_instructions/Interactive_Step_5.JPG
vignettes/Interactive_instructions/Interactive_Step_6.JPG
vignettes/SizeExtractR-Workflow.Rmd
