API for likelet/CaMutQC
An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations
| Global functions | |
|---|---|
| batchCSQ | Source code |
| calP | Source code |
| calSBscore | Source code |
| calTMB | Man page Source code |
| dbMessage | Source code |
| findQuestionMarks | Source code |
| getBiotypePriority | Source code |
| getConsequencePriority | Source code |
| getGnominfo | Source code |
| getValue | Source code |
| getVarClass | Source code |
| getVarFeature | Source code |
| helperBiotype | Source code |
| helperConsequence | Source code |
| helperRegion | Source code |
| jointMAF | Source code |
| mutCountRegion | Source code |
| mutFilterAdj | Man page Source code |
| mutFilterCan | Man page Source code |
| mutFilterCom | Man page Source code |
| mutFilterDB | Man page Source code |
| mutFilterNormalDP | Man page Source code |
| mutFilterPON | Man page Source code |
| mutFilterQual | Man page Source code |
| mutFilterRef | Man page Source code |
| mutFilterReg | Man page Source code |
| mutFilterSB | Man page Source code |
| mutFilterTech | Man page Source code |
| mutFilterType | Man page Source code |
| mutSelection | Man page Source code |
| processMafs | Source code |
| processMut | Man page Source code |
| readBed | Source code |
| readBedPanel | Source code |
| readINFO | Source code |
| remove1ststring | Source code |
| selectIndel | Source code |
| selectMut | Source code |
| selectTrans | Source code |
| toMesKit | Man page Source code |
| tomaftools | Man page Source code |
| vafHelper | Source code |
| vcfToMAF | Man page Source code |
| vcfhelper | Source code |
| withWarningsAndMessages | Source code |
