Man pages for lilyacb/MLMS
What the Package Does (One Line, Title Case)
| all_filenames | all_filenames: function to get all file names from a... |
| all_PA_trap | all_PA_trap: function to calculate all peak areas using the... |
| average_times | average_times: function that finds the averages of each peak... |
| avg_sd_d18O_standards | avg_sd_d18O_standards: function to find d18O/16O averages and... |
| build_expected_times | build_expected_times: function to build expected times data... |
| check_picked_and_vendor_peaks | check_picked_and_vendor_peaks: function that checks peak... |
| d18O_samples_list | d18O_samples_list: function to get sample peak and d18O data... |
| extract_tsfeatures | extract_tsfeatures: extract time series features from... |
| file_info | file_info: select specific information from a collection of... |
| file_move | file_move: function to move a file from one directory to... |
| filterSpecSignals | filterSpecSignals: function that filters out possible false... |
| find_expected_times | find_expected_times: function to find average values for... |
| find_files_by_analysis_num | find_files_by_analysis_num: function that gets filenames of... |
| generic_plot_all_raw | generic_plot_all_raw: function that plots all the raw data in... |
| generic_raw_plot | generic_raw_plot: function to plot raw data using generic... |
| group_picked_times | group_picked_times: function that organizes the times picked... |
| identifier_1_files | identifier_1_files: function to get filenames whose... |
| intensity_similarity_check | intensity_similarity_check: function that checks specified... |
| iso_ratio_similarity | iso_ratio_similarity: function that checks whether isotope... |
| move_identifier_1_files | move_identifier_1_files: function that moves all files with a... |
| peak_area_trap | peak_area_trap: function that returns the area of a peak... |
| peak_times_check | peak_times_check: function that checks whether peaks occur at... |
| peak_times_pick | peak_times_pick: function that gives the approximate peak... |
| peak_vend_times | peak_vend_times: function that returns the peak numbers and... |
| peak_vend_times_all | peak_vend_times_all: function that returns all peak times... |
| plot_all_peaks | plot_all_peaks: Function that plots every peak in an... |
| plot_individual_peaks | plot_individual_peaks: function to plot an individual peak in... |
| plot_ms | plot_ms: Function to plot mass spec data from vendor table |
| qc_num_vendPeaks | qc_num_vendPeaks: Function that checks for the correct number... |
| qc_peaks_vend | qc_peaks_vend: Function to check for peak presence |
| qc_samplePeaks | qc_samplePeaks: function that tests whether the expected... |
| raw_data | raw_data: get the raw data from the specified .dxf file as a... |
| raw_data_all | raw_data_all: function to get all raw data from multiple... |
| read_summary | read_summary: read and print a summary of mass spec data from... |
| reference_times_check | reference_times_check: function to determine if the expected... |
| reference_values_no_ratio | reference_values_no_ratio: get isotopic reference values... |
| reference_values_ratio | reference_values_ratio: get isotopic reference values... |
| remove_276 | remove_276: function to remove the (1st sample) peak at 276... |
| resistor_data | resistor_data: get resistor info for .dxf files as a... |
| sample_peaks_pre_process | sample_peaks_pre_process: function to separate out sample... |
| sample_peaks_process | sample_peaks_process: function to remove flush peak if... |
| sample_peaks_vend | sample_peaks_vend: function to grab the vendor info for the... |
| separate_by_analysis_num | separate_by_analysis_num: function to separate out data by... |
| sort_by_identifier_1 | sort_by_identifier_1: Function that sorts all .dxf files in a... |
| standardInputProc | standardInputProc: function that gets sample peak and... |
| standards_input_list | standards_input_list: function to create input list for... |
| stand_lm | stand_lm: function to perform the linear regression for the... |
| ThresholdingAlgo | ThresholdingAlgo: function based on dispersion to peak peak... |
| trap_area_allPks | trap_area_allPks: function to calculate area of all peaks in... |
| unique_identifiers | unique_identifiers: Function to find all of the different... |
| vendor_info | vendor_info: get selected vendor info for a .dxf file:... |
| vendor_info_all | vendor_info_all: function to get vendor table data from... |
