Files in lzcyzm/exomePeak
exome-based anlaysis of MeRIP-Seq data: peak calling and differential analysis
DESCRIPTION
NAMESPACE
NEWS
R/RMT.R
R/bed2transcriptdb.R
R/bltest.r
R/ctest.R
R/diff.consistency.evaluate.R
R/divide.anno.into.batches.R
R/exomepeak.R
R/exomepeak_notification.R
R/get.bam.chrs.R
R/get.bam.read.length.R
R/get.block.from.rna.peak.R
R/get.check.points.R
R/get.check.points.reads.count.R
R/get.gene.anno.R
R/get.peak.from.loci.R
R/get.peak.reads.count.R
R/get.reads.count.R
R/get.sample.id.R
R/get.table.peak.result.R
R/merge.and.compare.two.different.conditions.R
R/peak.calling.module.R
R/read.gtf.R
R/remove.local.anomalities.R
R/report.diff.peak.based.on.result.R
R/report.peak.based.on.result.R
R/rhtest.R
build/vignette.rds
inst/CITATION
inst/doc/exomePeak-Overview.R
inst/doc/exomePeak-Overview.Rnw
inst/doc/exomePeak-Overview.pdf
inst/extdata/IP1.bam
inst/extdata/IP1.bam.bai
inst/extdata/IP2.bam
inst/extdata/IP2.bam.bai
inst/extdata/IP3.bam
inst/extdata/IP3.bam.bai
inst/extdata/IP4.bam
inst/extdata/IP4.bam.bai
inst/extdata/Input1.bam
inst/extdata/Input1.bam.bai
inst/extdata/Input2.bam
inst/extdata/Input2.bam.bai
inst/extdata/Input3.bam
inst/extdata/Input3.bam.bai
inst/extdata/example.gtf
inst/extdata/treated_IP1.bam
inst/extdata/treated_IP1.bam.bai
inst/extdata/treated_Input1.bam
inst/extdata/treated_Input1.bam.bai
man/RMT.Rd
man/bltest.Rd
man/ctest.Rd
man/exomePeak-package.Rd
man/exomepeak.Rd
man/rhtest.Rd
vignettes/exomePeak-Overview.Rnw
vignettes/exomePeak-Overview.tex
vignettes/exomePeak_output/con_peak.bed
vignettes/exomePeak_output/con_peak.xls
vignettes/exomePeak_output/con_sig_diff_peak.bed
vignettes/exomePeak_output/con_sig_diff_peak.xls
vignettes/exomePeak_output/diff_peak.bed
vignettes/exomePeak_output/diff_peak.xls
vignettes/exomePeak_output/exomePeak.Rdata
vignettes/exomePeak_output/peak.bed
vignettes/exomePeak_output/peak.xls
vignettes/exomePeak_output/sig_diff_peak.bed
vignettes/exomePeak_output/sig_diff_peak.xls
