API for magnusdv/ribd
Pedigree-based Relatedness Coefficients
| Global functions | |
|---|---|
| .comb2 | Source code |
| .fixPlotlyText | Source code |
| .idPairs | Source code |
| .kappaX | Source code |
| .kinshipX | Source code |
| .myintersect | Source code |
| .myorder | Source code |
| .mysetdiff | Source code |
| .mysort | Source code |
| ELR | Man page Source code |
| Xmask | Source code |
| `%||%` | Source code |
| `[.gip` | Source code |
| `[[.simple_sparse_array` | Source code |
| `[[<-.simple_sparse_array` | Source code |
| addFounderParents | Source code |
| ancestralKinship | Source code |
| basicRelationships | Man page |
| boundaryB2 | Source code |
| boundary_test | Source code |
| boundary_value | Source code |
| char2kinList | Source code |
| checkInt | Source code |
| chooseGenKinMethod | Source code |
| chooseIdentityMethod | Source code |
| coeffTable | Man page Source code |
| col2hex | Source code |
| condensedIdentity | Man page Source code |
| condensedIdentityX | Man page Source code |
| constructPedigree | Man page Source code |
| debugReturn | Source code |
| detailed2condensed | Man page Source code |
| expandSwaps | Source code |
| external_coefs | Man page |
| fast.grid | Source code |
| formatKin2L | Source code |
| gKinship | Man page Source code |
| gKinship_GC | Source code |
| gKinship_Karigl | Source code |
| gKinship_LS | Source code |
| gKinship_WL | Source code |
| genKin2L | Source code |
| gip | Man page Source code |
| gip2list | Source code |
| gip2string | Source code |
| gipReduce | Source code |
| gipRepl1 | Source code |
| gipReplace | Source code |
| gipReplaceDet | Source code |
| gipSort | Source code |
| ibdDraw | Man page Source code |
| ibdTriangle | Man page Source code |
| ibdTriangleGG | Source code |
| ibdTrianglePlotly | Source code |
| identityCoefs | Man page Source code |
| identity_GC | Source code |
| identity_Karigl | Source code |
| identity_LS | Source code |
| identity_WL | Source code |
| identity_idcoefs | Source code |
| identity_merlin | Source code |
| inbreeding | Man page Source code |
| inbreedingContributions | Source code |
| initialiseMemo | Source code |
| initialiseTwoLocusMemo | Source code |
| isDeterministic | Source code |
| isDistinct | Source code |
| isGip | Source code |
| jicaque | Man page |
| jmat2df | Source code |
| kappaIBD | Man page Source code |
| kin2L | Source code |
| kin2deg | Man page Source code |
| kinImpossible | Source code |
| kinList2char | Source code |
| kinList2internal | Source code |
| kinReduce | Source code |
| kinRepl_1L | Source code |
| kinReplace | Source code |
| kinship | Man page Source code |
| kinship2_inbreeding | Man page Source code |
| kinship2_kinship | Man page Source code |
| memoIdentity | Source code |
| minimalPattern | Man page Source code |
| multiPersonIBD | Man page Source code |
| newKin2L | Source code |
| parityCounts | Source code |
| phi2 | Source code |
| phi22 | Source code |
| phi3 | Source code |
| phi4 | Source code |
| prepIds | Source code |
| prepPed | Source code |
| print.gip | Source code |
| print.kin2L | Source code |
| printAndReturn | Source code |
| printCounts | Source code |
| printCounts2 | Source code |
| printMemInfo | Source code |
| printMess | Source code |
| psi1G | Source code |
| psi22 | Source code |
| realisedIbdVariance | Man page Source code |
| recurse_GC | Source code |
| recurse_LS | Source code |
| recurse_WL | Source code |
| recurse_eq10 | Source code |
| recurse_eq11a | Source code |
| recurse_eq11b | Source code |
| recurse_eq7 | Source code |
| recurse_eq8 | Source code |
| recurse_eq9a | Source code |
| recurse_eq9b | Source code |
| removeImpossiblePatterns | Source code |
| restrictionD1 | Source code |
| restrictionD2 | Source code |
| ribd | Man page |
| ribd-package | Man page |
| safe_sample | Source code |
| showInTriangle | Man page Source code |
| sortPairs | Source code |
| sort_kin2L | Source code |
| standardAlleleSeq | Source code |
| stop2 | Source code |
| twoLocKin | Source code |
| twoLocusGeneralisedKinship | Source code |
| twoLocusIBD | Man page Source code |
| twoLocusIBD_bilineal | Source code |
| twoLocusIBD_simple | Source code |
| twoLocusIBD_unilineal | Source code |
| twoLocusIdentity | Man page Source code |
| twoLocusInbreeding | Man page Source code |
| twoLocusK2 | Source code |
| twoLocusKinship | Man page Source code |
| twoLocusPlot | Man page Source code |
| validateKin2L | Source code |
