API for mahendra-mariadassou/phyloseq-extended
| Global functions | |
|---|---|
| color.legend | Source code |
| color_edges | Source code |
| compute_niche | Source code |
| construct_aesthetics | Source code |
| correct_levels | Source code |
| daOTU_plot | Source code |
| edgePCA | Source code |
| estimate_local_specificity | Source code |
| estimate_prevalence | Source code |
| estimate_specificity | Source code |
| expected_robust_specificity | Source code |
| extract_eigenvalue | Source code |
| extract_eigenvalue.cca | Source code |
| extract_eigenvalue.decorana | Source code |
| extract_eigenvalue.default | Source code |
| extract_eigenvalue.dpcoa | Source code |
| extract_eigenvalue.pca | Source code Source code |
| extract_eigenvalue.pcoa | Source code |
| extract_eigenvalue.rda | Source code |
| extract_level | Source code |
| fattenEdges | Source code |
| filter_abundance | Source code |
| filter_phyloseq | Source code |
| g_legend | Source code |
| get_legend_dimension | Source code |
| gg_color_hue | Source code |
| ggformat | Source code |
| ggnorm | Source code |
| ggpdrare | Source code |
| ggrare | Source code |
| import_frogs | Source code |
| incidenceMatrix | Source code |
| local_abundances | Source code |
| local_specificity | Source code |
| ncm_curve | Source code |
| ncm_curve_multi | Source code |
| ncm_fit | Source code |
| ncm_ll | Source code |
| pca | Source code |
| phylodiv | Source code |
| plotLoadings | Source code |
| plot_biplot | Source code |
| plot_clust | Source code |
| plot_composition | Source code |
| plot_dist_as_heatmap | Source code |
| plot_edgepca | Source code |
| plot_local_specificity | Source code |
| plot_merged_trees | Source code |
| plot_pretty_legend | Source code |
| plot_pretty_tree | Source code |
| plot_samples | Source code |
| plot_specificity | Source code |
| plot_specificity_distribution | Source code |
| regularizedPca | Source code |
| replicate_means | Source code |
| sample_copy_number_internal | Source code |
| scale_sample_counts | Source code |
| scores.pca | Source code |
| sparsePca | Source code |
| sparsePca.lambda | Source code |
| specific_rarefaction | Source code |
| specificity | Source code |
| support_taxa | Source code |
| ternary_norm | Source code |
| ternary_plot | Source code |
| test_local_specificity | Source code |
| test_specificity | Source code |
| top_conditions | Source code |
| top_taxa | Source code |
| top_taxa_abundance | Source code |
| tree_colored_by | Source code |
