API for maialab/agvgd
An R Implementation of the 'Align-GVGD' Method
| Global functions | |
|---|---|
| %>% | Man page |
| _PACKAGE | Man page |
| `[.align_mat` | Source code |
| add_align_mat_class | Source code |
| again_gapped | Source code |
| agvgd | Man page Source code |
| agvgd-package | Man page |
| agvgd_ | Source code |
| alignment_file | Man page Source code |
| amino_acids | Man page Source code |
| are_all_one_letter | Source code |
| are_all_three_letter | Source code |
| as.matrix.align_mat | Source code |
| as_three_letter | Source code |
| check_alignment | Source code |
| check_poi | Source code |
| check_substitution | Source code |
| cpv_ranges | Man page Source code |
| cpv_ranges_after_gaps | Source code |
| dev | Man page Source code |
| filter_alignment | Source code |
| gap_cases | Source code |
| gap_padding | Source code |
| gd | Man page Source code |
| gv | Man page Source code |
| gvgd_to_class | Source code |
| is_align_mat_class | Source code |
| is_poi_a_gap | Source code |
| line_annotation | Source code |
| line_start_positions | Source code |
| matrix_to_list | Source code |
| max_gap_streak | Source code |
| max_seq_length | Source code |
| nr_lines_per_seq | Source code |
| number_width | Source code |
| pad_seq_names | Source code |
| parse_substitutions | Source code |
| poi_to_res | Man page Source code |
| print.align_mat | Source code |
| print_align_mat | Source code |
| profile_to_alignment | Man page Source code |
| read_agvgdweb_results | Man page Source code |
| read_alignment | Man page Source code |
| read_substitutions | Man page Source code |
| ref_sequence | Source code |
| remove_align_mat_class | Source code |
| res_to_poi | Man page Source code |
| safe_rownames | Source code |
| seq_names | Source code |
| split_by_width | Source code |
| str_chop | Man page Source code |
| write_alignment | Man page Source code |
| write_substitutions | Man page Source code |
