maialab/grantham: Calculate the 'Grantham' Distance

A minimal set of routines to calculate the 'Grantham' distance <doi:10.1126/science.185.4154.862>. The 'Grantham' distance attempts to provide a proxy for the evolutionary distance between two amino acids based on three key chemical properties: composition, polarity and molecular volume. In turn, evolutionary distance is used as a proxy for the impact of missense mutations. The higher the distance, the more deleterious the substitution is expected to be.

Getting started

Package details

Maintainer
LicenseMIT + file LICENSE
Version0.1.1
URL https://maialab.org/grantham/ https://github.com/maialab/grantham
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("maialab/grantham")
maialab/grantham documentation built on Aug. 1, 2024, 2:32 a.m.