Man pages for malemay/delgbs
Detection of deletions and duplications from GBS data
| bin_reads | Count reads in genomic bins |
| call_events | Call CNV events from a set of read counts |
| chromplot | A function to visualize log2 ratios and events for all... |
| count_reads | Count the number of reads falling into genomic bins |
| delgbs | delgbs: Detection of deletions and duplications from GBS data |
| filter_bins | Filtering bins according to user-defined thresholds |
| filter_calls | Filter CNV calls according to various criteria |
| filter_out | Filter out events located in heterogeneity areas |
| getdels | Extract putative CNVs from a set of segments |
| get_pos | A function to get the positions of the reads given a BAM file |
| getseg | Extract the segments from a given individual |
| gmax_binlist | List of 1-kb bins for tallying reads in the soybean genome |
| gmax_chr_sizes | Length of the chromosomes of genome assembly 2 of soybean |
| merge_counts | Merge two read count datasets |
| segment | Segment the log2 ratios for a set of individuals |
| segplot | A function to visualize log2 ratios and events for all... |
| var_diff | Difference based estimation of the variance |
