API for mandymejia/BayesfMRI
Spatial Bayesian Methods for Task Functional MRI Studies

Global functions
.findTheta Man page Source code
.getSqrtInvCpp Man page Source code
.initialKP Man page Source code
.logDetQt Man page Source code
.logwt Source code
AICc Man page Source code
BOLD_Param_BayesGLM Man page
BayesGLM Man page Source code
BayesGLM2 Man page Source code
BayesGLM_argChecks Man page Source code
BayesGLM_format_cifti Man page Source code
BayesGLM_format_design Man page Source code
BayesGLM_format_nuisance Man page Source code
BayesGLM_format_scrub Man page Source code
BayesGLM_is_valid_one_design Man page Source code
BayesGLM_is_valid_one_nuisance Man page Source code
BayesGLM_is_valid_one_scrub Man page Source code
BayesGLM_session_names Man page Source code
Bayes_Param Man page
BayesfMRI Man page
BayesfMRI-package Man page
Connectome_Workbench_Description Man page
ELL Man page Source code
EM_Param Man page
F.logwt Man page
GLMEM_fixptseparate Man page Source code
GLMEM_objfn Man page Source code
GLM_classical Man page Source code
GLM_compare Man page Source code
GLM_est_resid_var_pw Man page Source code
INLA_Description Man page
INLA_Latent_Fields_Limit_Description Man page
INLA_deps Man page
Q_prime Man page Source code
SPDE_from_vertex Man page Source code
SPDE_from_voxel Man page Source code
TR_Param_BayesGLM Man page
TrQEww Man page Source code
TrQbb Man page Source code
TrSigB Man page Source code
activations Man page Source code
activations.classical Man page Source code
activations.posterior Man page Source code
aic_Param Man page
ar_order_Param Man page
ar_smooth_Param Man page
beta.posterior.thetasamp Man page Source code
boundary_layers Source code
brainstructures_Param_BayesGLM Man page
buffer_Param Man page
cbind2 Man page Source code
checkX_VIF Source code
checkX_cor Source code
check_INLA Man page Source code
cholQsample Man page Source code
contrasts_Param Man page
create_listRcpp Man page Source code
crop.lists Source code
design_Param_BayesGLM Man page
dgCMatrix_cols_to_zero Man page Source code
do_QC Man page Source code
emTol_Param Man page
excursions.inla.no.spurious Source code
excursions.no.spurious Source code
extract_estimates Man page Source code
faces_Param Man page
field_names_Param Man page
find.connected Source code
find.smallest.activation Source code
fit_bayesglm Man page Source code
galerkin_db Man page Source code
get_nV Man page Source code
get_posterior_densities Man page Source code
get_posterior_densities2 Man page Source code
hpf_Param_BayesGLM Man page
id_activations Man page Source code
init_fixpt Man page Source code
init_objfn Man page Source code
intersect_mask Man page Source code
is_matrix_or_df Man page Source code
kappa_init_fn Man page Source code
log_kappa_tau Man page Source code
make_A_mat Man page Source code
make_A_mat_rs Man page Source code
make_Q Man page Source code
make_data_list Man page Source code
make_mesh Man page Source code
make_replicates Man page Source code
make_spde_surf Source code
make_sqrtInv_all Man page Source code
mask_Param_vertices Man page
mask_with_boundary Source code
max_threads_Param Man page
mean_var_Tol_Param Man page
mesh_Param_either Man page
mesh_Param_inla Man page
nT_message Source code
n_threads_Param Man page
nbhd_order_Param Man page
neg_kappa_fn Man page Source code
neg_kappa_fn2 Man page Source code
neg_kappa_fn3 Man page Source code
neg_kappa_fn4 Man page Source code
nuisance_Param_BayesGLM Man page
plot.BGLM Man page Source code
plot.BGLM2 Man page Source code
plot.act_BGLM Man page Source code
plot.prev_BGLM Man page Source code
prep_kappa2_optim Man page Source code
prevalence Man page Source code
print.BGLM Man page Source code
print.BGLM2 Man page Source code
print.act_BGLM Man page Source code
print.act_fit_bglm Man page Source code
print.fit_bglm Man page Source code
print.fit_bglm2 Man page Source code
print.prev_BGLM Man page Source code Source code
print.prev_fit_bglm Man page Source code Source code
print.summary.BGLM Man page Source code
print.summary.BGLM2 Man page Source code
print.summary.act_BGLM Man page Source code
print.summary.act_fit_bglm Man page Source code
print.summary.fit_bglm Man page Source code
print.summary.fit_bglm2 Man page Source code
print.summary.prev_BGLM Man page Source code Source code
print.summary.prev_fit_bglm Man page Source code Source code
pw_estimate Man page Source code
pw_smooth Man page Source code
qsample Man page Source code
radial_order Source code
resamp_res_Param_BayesGLM Man page
retro_mask_act Man page Source code
retro_mask_fit_bglm Man page Source code
retro_mask_mesh Man page Source code
return_INLA_Param Man page
s2m Man page Source code
s2m_B Man page Source code
scale_BOLD Man page Source code
scale_BOLD_Param Man page
scale_design_mat Man page Source code
scrub_Param_BayesGLM Man page
seed_Param Man page
session_names_Param Man page
sparse_and_PW Man page Source code
spde_Q_phi Man page Source code
summarize_sessions Source code
summary.BGLM Man page Source code
summary.BGLM2 Man page Source code
summary.act_BGLM Man page Source code
summary.act_fit_bglm Man page Source code
summary.fit_bglm Man page Source code
summary.fit_bglm2 Man page Source code
summary.prev_BGLM Man page Source code Source code
summary.prev_fit_bglm Man page Source code Source code
surfaces_Param_BayesGLM Man page
trim_INLA_Param Man page
trim_INLA_model_obj Man page Source code
unmask_Mdat2In Man page Source code
validate_spatial Man page Source code
verbose_Param Man page
vert_adjacency Source code
vertex_areas Man page Source code
vertices_Param Man page
vol2spde Man page Source code
mandymejia/BayesfMRI documentation built on April 12, 2025, 3:44 p.m.