Files in mandymejia/templateICAr

Estimate Brain Networks and Connectivity with ICA and Empirical Priors

NEWS.md R/EM_diagnosticICA.R R/EM_templateICA.R R/INLA_check.R R/MIGP.R R/VB_FCtemplateICA.R R/activations.R R/activations.methods.R R/activations_utils.R R/check_parallel_packages.R R/dim_reduce.R R/dual_reg2.R R/estimate_template.R R/estimate_template.methods.R R/estimate_template.utils.R R/export_template.R R/groupICA.R R/ignore.R R/make_mesh.R R/norm_BOLD.R R/orthonorm.R R/removebs_template.R R/resample_template.R R/rm_nuisIC.R R/rox_args_docs.R R/templateICA.R R/templateICA.methods.R R/utils.R README.Rmd README.md cran-comments.md man/Chol_samp_fun.Rd man/EM_templateICA.Rd man/GSR_Param.Rd man/INLA_check.Rd man/IW_var.Rd man/IW_var_cor.Rd man/LL2_kappa.Rd man/LL_SQUAREM.Rd man/Q2_max_check.Rd man/TR_param.Rd man/UT2mat.Rd man/UpdateThetaSQUAREM_templateICA.Rd man/UpdateTheta_templateICA.Rd man/VB_FCtemplateICA.Rd man/activations.Rd man/add_str.Rd man/bdiag_m.Rd man/bdiag_m2.Rd man/check_parallel_packages.Rd man/check_req_ifti_pkg.Rd man/compute_LL_std.Rd man/compute_R_inv.Rd man/compute_mu_s.Rd man/dim_reduce.Rd man/dual_reg2.Rd man/estimate.ESS.Rd man/estimate_nu.Rd man/estimate_nu_matrix.Rd man/estimate_template.Rd man/estimate_template_FC.Rd man/estimate_template_from_DR.Rd man/estimate_template_from_DR_two.Rd man/export_template.Rd man/format_activation_name.Rd man/getInvCovAR.Rd man/get_FORMAT.Rd man/groupICA.cifti.Rd man/halflogdetX.Rd man/hpf_param.Rd man/lik.Rd man/loglik_kappa_est.Rd man/make_Pmat.Rd man/make_mask.Rd man/make_mesh.Rd man/make_mesh_2D.Rd man/norm_BOLD.Rd man/orthonorm.Rd man/plot.tICA.cifti.Rd man/plot.tICA.matrix.Rd man/plot.tICA.nifti.Rd man/plot.tICA_act.cifti.Rd man/plot.template.cifti.Rd man/plot.template.gifti.Rd man/plot.template.matrix.Rd man/plot.template.nifti.Rd man/pw_estimate.Rd man/removebs_template.Rd man/resample_template.Rd man/rm_nuisIC.Rd man/scale_Param.Rd man/sqrt_XtX.Rd man/struct_template.Rd man/summary.tICA.cifti.Rd man/summary.tICA.matrix.Rd man/summary.tICA.nifti.Rd man/summary.tICA_act.cifti.Rd man/summary.tICA_act.matrix.Rd man/summary.tICA_act.nifti.Rd man/summary.template.cifti.Rd man/summary.template.gifti.Rd man/summary.template.matrix.Rd man/summary.template.nifti.Rd man/templateICA.Rd man/update_A.Rd man/update_A_Chol.Rd man/update_S.Rd man/update_tau2.Rd man/varTol_Param.Rd man/var_sq_err.Rd man/var_sq_err_constrained.Rd tests/run_templateICAr_tests.R tests/run_templateICAr_tests_notInPackage.R tests/testthat.R tests/testthat/test-misc.R