| alkalinity | Calculates solution alkalinity |
| aqueous.step | Uses Henry's Law to calculate dissolved gas concentrations |
| biomass.coefficient | Amount of biomass produced for every DIC consumed |
| calculate.Kgas | Calculates Henry's constant for a gas |
| calculate.KH | Calculates equilibrium constants using CHNOSZ |
| carbon.yield | Biomass to carbon yield |
| CH4.coefficient | Amount of CH4 produced for every DIC consumed |
| gibbs.step | Calculates Gibbs free energy |
| growth | Determines the number of new cells generated using Monod... |
| H2.coefficient | Amount of H2 consumed for every DIC consumed |
| init | Determines initial conditions from initial inputs |
| methanogenesis.DIC | Steps through DIC consumption during a methanogenesis... |
| methanogenesis.time | Steps through time during a methanogenesis reaction |
| PCO2 | Calculates CO2 pressure in the head space of the closed... |
| pH | Calculates pH of the solution |
| pressure.step | Calculates head space pressure |
| standard.gibbs | Calculates standard Gibbs free energy for a given temperature... |
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