Files in marconotaro/hemdag
Hierarchical Ensemble Methods for Directed Acyclic Graphs
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
MD5
NAMESPACE
NEWS.md
R/annotation.utility.R
R/gpav.R
R/graph.utility.R
R/htd.dag.R
R/norm.fun.R
R/obozinski.methods.R
R/perf.meas.R
R/pkg.attach.R
R/pkg.import.R
R/tpr.dag.R
README.md
data/graph.rda
data/labels.rda
data/scores.rda
data/test.index.rda
data/wadj.rda
docs/Makefile
docs/_static/max-width.css
docs/authors.rst
docs/call.rst
docs/cite.bib
docs/citing.rst
docs/conf.py
docs/contributing.rst
docs/environment.yml
docs/faq.rst
docs/history.rst
docs/index.rst
docs/install.rst
docs/license.rst
docs/make.bat
docs/pictures/graph.png
docs/playground/data/cv/7227_drome_go_mf_ann_20dec17.rda
docs/playground/data/cv/7227_drome_go_mf_dag_20dec17.rda
docs/playground/data/cv/7227_drome_go_mf_scores_pearson_100_feature_ranger_5fcv.rda
docs/playground/data/ho/7227_drome_go_mf_ann_20dec17_16jun20.rda
docs/playground/data/ho/7227_drome_go_mf_dag_20dec17_16jun20.rda
docs/playground/data/ho/7227_drome_go_mf_scores_svmlinear_holdout.rda
docs/playground/data/ho/7227_drome_go_mf_testindex_20dec17_16jun20.rda
docs/playground/script/hemdag-call.R
docs/playground/script/hemdag-checker.R
docs/playground/script/hemdag-chunk.pl
docs/playground/script/hemdag-eval.R
docs/quickstart.rst
docs/refs.bib
docs/requirements.txt
docs/tutorial.rst
docs/usage.rst
inst/CITATION
inst/HEMDAG_2.7.4.pdf
inst/extdata/edges.txt.gz
inst/extdata/gene2pheno.txt.gz
inst/extdata/graph.edges.txt.gz
inst/extdata/scores.list.txt.gz
inst/extdata/scores.tupla.txt.gz
man/HEMDAG-package.Rd
man/adj.upper.tri.Rd
man/auprc.Rd
man/auroc.Rd
man/build.ancestors.Rd
man/build.children.Rd
man/build.consistent.graph.Rd
man/build.descendants.Rd
man/build.edges.from.hpo.obo.Rd
man/build.parents.Rd
man/build.scores.matrix.Rd
man/build.subgraph.Rd
man/build.submatrix.Rd
man/check.annotation.matrix.integrity.Rd
man/check.dag.integrity.Rd
man/compute.flipped.graph.Rd
man/constraints.matrix.Rd
man/create.stratified.fold.df.Rd
man/distances.from.leaves.Rd
man/example.datasets.Rd
man/find.best.f.Rd
man/find.leaves.Rd
man/fmax.Rd
man/full.annotation.matrix.Rd
man/gpav.Rd
man/gpav.holdout.Rd
man/gpav.over.examples.Rd
man/gpav.parallel.Rd
man/gpav.vanilla.Rd
man/graph.levels.Rd
man/hierarchical.checkers.Rd
man/htd.Rd
man/htd.holdout.Rd
man/htd.vanilla.Rd
man/lexicographical.topological.sort.Rd
man/multilabel.F.measure.Rd
man/normalize.max.Rd
man/obozinski.heuristic.methods.Rd
man/obozinski.holdout.Rd
man/obozinski.methods.Rd
man/pxr.Rd
man/read.graph.Rd
man/read.undirected.graph.Rd
man/root.node.Rd
man/scores.normalization.Rd
man/specific.annotation.list.Rd
man/specific.annotation.matrix.Rd
man/stratified.cross.validation.Rd
man/tpr.dag.Rd
man/tpr.dag.cv.Rd
man/tpr.dag.holdout.Rd
man/transitive.closure.annotations.Rd
man/tupla.matrix.Rd
man/unstratified.cv.data.Rd
man/weighted.adjacency.matrix.Rd
man/write.graph.Rd
src/Makevars
src/gpav.cpp
src/registerDynamicSymbol.c
tests/testthat.R
tests/testthat/make.test.data.R
tests/testthat/test.annotation.utility.R
tests/testthat/test.gpav.R
tests/testthat/test.graph.utility.R
tests/testthat/test.htd.dag.R
tests/testthat/test.obozinski.methods.R
tests/testthat/test.perf.meas.R
tests/testthat/test.tpr.dag.R
