Man pages for marcottelab/diffprot
Compute Differential Proteomics
| combine_exps | Combine and compare proteomics experiments. |
| combine_reps | Combine replicates for a proteomics experiment. |
| compute_fxn | Compute fold-change values for XICs and PSMs & Z-scores for... |
| enrich | Annotate and compute fold-changes and Z-scores for... |
| format_pd_file | Format a Proteins.txt file output by Proteome Discoverer 2.3,... |
| format_psm_file | Format a PSM.txt file output by Proteome Discoverer 2.3,... |
| impute_fxn | Impute minimum values for AUC XICs for each accession in both... |
| psmplot | Visualize control PSMs versus test PSMs on a log-log plot. |
| zplot | Plot Z-scores across biological replicates. |
