Man pages for marlonecobos/ellipsenm
Ecological Niche's Characterizations Using Ellipsoids
| buffer_area | Polygons based on buffered occurrences |
| calibration_ellipsoid | An S4 class to organize data and results of... |
| cluster_split | Split data based on clusters |
| concave_area | Concave hull polygons based on occurrences |
| convex_area | Convex hull polygons based on occurrences |
| data_overlap | An S4 class to organize data for data_overlap objects |
| data_subsample | Helper function to subsample occurrence data |
| ellipsenm | ellipsenm: An R package for ecological niche's... |
| ellipsoid | An S4 class to organize data and results of ellipsoid*... |
| ellipsoid_calibration | Calibration of ellipsoid-based ecological niche models |
| ellipsoid_fit | Fit ellipsoids based on distinct methods |
| ellipsoid_model | Ellipsoid-based ecological niche models |
| ellipsoid_overlap | Overlap of ellipsoid-based ecological niche models |
| ellipsoid_volume | Helper function to calculate niche volume |
| explore_espace | Exploration of data in enviornmental space |
| get_attribute | Helper funtion to get attributes from ellipsoid lists |
| hypercube_boundaries | Helper funtion to get data for Montecarlo simulations |
| interpretation_espace | Helper function for interpretation of exploratory figures |
| mbased_mve | Fit moment-based minimum volumen ellipsoids |
| mmm_ellipsoid | Mean, min, and max ellipsoids |
| model_projection | Helper function to project models to distinct scenarios |
| ndata_quantile | Helper function to calculate quantiles |
| occ_blocksplit | Split occurrences in training and testing data using blocks |
| occ_randsplit | Split occurrences randomly in training and testing data |
| overlap_ellipsoid | An S4 class to organize data and results of overlap_ellipsoid... |
| overlap_metrics | Helper function to compute overlap metrics |
| overlap_object | Helper funtion to create data_overlap objects |
| overlap_random | Overlap analyses for random sampled data |
| partial_roc | Partial ROC calculation for ecological niche models |
| plot_overlap | Plot results of niche overlap analyses |
| plot_overlap_sig | Plot results of significance tests for niche overlap analyses |
| polygon_selection | Selection of spatial polygons based on occurrences |
| predict | Suitability and Mahalanobis distance predictions from... |
| prepare_sets | Prepare sets of variables for calibration |
| raster_poly | Helper function to obtain polygon from RasterLayer |
| report | Creation of HTML reports from ellipsenm main processes |
| report_format | Helper function to format function reports |
| rformat_type | Helper function to find raster extention |
| save_areas | Helper function to save results from calibration area... |
| select_best | Helper funtion to select best parameter settings |
| split_data | Split occurrence data into training and testing data |
| summary | Summary of attributes and results |
| thin_data | Spatial thinning of occurrence data |
| to_closest | Move occurrences to closest pixel with environmental data |
| variable_correlation | Evaluates correlation among variables |
| wgs_aeqd | Helper function to project points |
| write_ellmeta | Helperf function to get and write ellipsoid metadata |
