Files in martijn-cordes/ImSpectR
R package to quantify CDR3 data for immune repertoire diversity
.Rbuildignore
.gitignore
DESCRIPTION
ImSpectR.Rproj
NAMESPACE
R/align_peak_pattern.R
R/generate_artificial_WT.R
R/get_basepair_positions.R
R/get_peak_positions.R
R/preprocess_cdr3_10x.R
R/preprocess_cdr3_seq.R
R/preprocess_cdr3_spectratype.R
R/score_dataset.R
R/score_pattern_alignment.R
R/score_perfect_plot.R
R/score_sample.R
README.md
builds/ImSpectR_1.7.6.tar.gz
data/fsa.loaded.RData
inst/extdata/cdr_sequencing_data/C57BL_6-Spleen-1.tsv
inst/extdata/cdr_sequencing_data/C57BL_6-Spleen-2.tsv
inst/extdata/spectratype_data/01WT 01.fsa
inst/extdata/spectratype_data/01WT 02.fsa
inst/extdata/spectratype_data/01WT 03.1.fsa
inst/extdata/spectratype_data/01WT 04.fsa
inst/extdata/spectratype_data/01WT 05.2h.fsa
inst/extdata/spectratype_data/01WT 06.fsa
inst/extdata/spectratype_data/01WT 07.fsa
inst/extdata/spectratype_data/01WT 08.1h.fsa
inst/extdata/spectratype_data/01WT 08.2.fsa
inst/extdata/spectratype_data/01WT 08.3.fsa
inst/extdata/spectratype_data/01WT 09.fsa
inst/extdata/spectratype_data/01WT 10.fsa
inst/extdata/spectratype_data/01WT 11.fsa
inst/extdata/spectratype_data/01WT 12.fsa
inst/extdata/spectratype_data/01WT 13.fsa
inst/extdata/spectratype_data/01WT 14.fsa
inst/extdata/spectratype_data/01WT 15.fsa
inst/extdata/spectratype_data/01WT 16.fsa
inst/extdata/spectratype_data/01WT 17.fsa
inst/extdata/spectratype_data/01WT 18.fsa
inst/extdata/spectratype_data/01WT 19.fsa
inst/extdata/spectratype_data/01WT 20.fsa
man/hello.Rd
