Man pages for marvinquiet/LRcell
Differential cell type change analysis using Logistic/linear Regression
| enrich_posfrac_score | Calculate enrichment scores for each cell type in a specific... |
| example_gene_pvals | Example gene_pvals named vector from mouse experiment. |
| example_LRcell_res | An example output of LRcell using data example_gene_pvals and... |
| get_markergenes | Get top marker genes for each subcluster |
| LRcell | Cell-type enrichment analysis for preranked gene set. |
| LRcellCore | Find most enriched cell types in bulk DE genes by Logistic... |
| LRcell_gene_enriched_scores | Find most enriched cell types in bulk DE genes by Logistic... |
| mouse_celltypes | Mapping between subclusters and cell types in Mouse Brain |
| mouse_FC_marker_genes | Example marker genes from mouse FC brain region. |
| plot_manhattan_enrich | Manhattan plot for the enrichment of cell types |
| plot_marker_dist | Plot marker genes distribution on DE gene rank |
