API for mathii/slattice
Estimates selection coefficients in spatially structured data
| Global functions | |
|---|---|
| approx.MLE | Source code |
| approx.MLE.haploid | Source code |
| approx.MLE.s2d | Source code |
| approx.em.MLE | Source code |
| approx.em.MLE.s2d | Source code |
| approx.lattice.m.hat | Source code |
| approx.lattice.m.hat.em | Source code |
| approx.lattice.s.hat | Source code |
| approx.lattice.s.hat.constant | Source code |
| approx.lattice.s.hat.constant.em | Source code |
| approx.lattice.s.hat.em | Source code |
| approx.lattice.s.hat.ij | Source code |
| approx.lattice.s.hat.ij.em | Source code |
| approx.second.order.MLE | Source code |
| ci.objective | Source code |
| ci.objective.lattice | Source code |
| dl.ds | Source code |
| dl.ds.eqn2 | Source code |
| estimate.s | Source code |
| estimate.s.m | Source code |
| expected.total.heterozygosity | Source code |
| expected.total.heterozygosity.p0 | Source code |
| find.confidence.interval | Source code |
| find.confidence.interval.lattice | Source code |
| generate.lattice.observations | Source code |
| generate.lattice.observations.from.path | Source code |
| generate.observations | Source code |
| generate.observations.from.path | Source code |
| initialize.simulation | Source code |
| inm.binomial.errorbars | Source code |
| inm.gaussian.errorbars | Source code |
| inm.lighten.cols | Source code |
| inm.plot.isoprobs | Source code |
| interpolate.f | Source code |
| iterate.approx.mle | Source code |
| lattice.s.hat | Source code |
| m.lattice.likelihood | Source code |
| mig.rate.mat | Source code |
| p.value | Source code |
| plot.estimate.distribution | Source code |
| plot.lattice.likelihoods | Source code |
| plot.likelihood | Source code |
| plot.wright.fisher.lattice.afs | Source code |
| plot.wright.fisher.lattice.observations | Source code |
| plot.wright.fisher.observations | Source code |
| s.estimate.hard.em | Source code |
| s.estimate.hard.em.s2d | Source code |
| s.estimate.simple | Source code |
| s.estimate.soft.em | Source code |
| s.estimate.soft.em.s2d | Source code |
| s.estimate.stochastic.em | Source code |
| s.lattice.likelihood.vector | Source code |
| s.likelihood | Source code |
| s.m.estimate.em.lattice | Source code |
| s.m.lattice.likelihood | Source code |
| s.m.lattice.likelihood.vector | Source code |
| simulate.wright.fisher | Source code |
| simulate.wright.fisher.change | Source code |
| simulate.wright.fisher.dominance | Source code |
| simulate.wright.fisher.fixation | Source code |
| simulate.wright.fisher.fixation.1 | Source code |
| simulate.wright.fisher.lattice | Source code |
| update.s.m | Source code |
| update.s.m.em | Source code |
| wfhmm.backwards | Source code |
| wfhmm.call | Source code |
| wfhmm.conditional.expectation | Source code |
| wfhmm.emission | Source code |
| wfhmm.forward | Source code |
| wfhmm.forward.backwards | Source code |
| wfhmm.lattice.backwards | Source code |
| wfhmm.lattice.call | Source code |
| wfhmm.lattice.copy.params | Source code |
| wfhmm.lattice.emission | Source code |
| wfhmm.lattice.forward | Source code |
| wfhmm.lattice.forward.backward | Source code |
| wfhmm.lattice.simulate | Source code |
| wfhmm.lattice.transmission | Source code |
| wfhmm.lattice.viterbi | Source code |
| wfhmm.log.likelihood | Source code |
| wfhmm.model.log.likelihood | Source code |
| wfhmm.model.path.lattice.likelihood | Source code |
| wfhmm.model.path.log.likelihood | Source code |
| wfhmm.observation.lattice.likelihood | Source code |
| wfhmm.observation.log.likelihood | Source code |
| wfhmm.path.log.likelihood | Source code |
| wfhmm.setup.params | Source code |
| wfhmm.simulate | Source code |
| wfhmm.transition | Source code |
| wfhmm.transition.binomial | Source code |
| wfhmm.transition.poisson | Source code |
| wfhmm.viterbi | Source code |
| wfhmm_s2d.backwards | Source code |
| wfhmm_s2d.call | Source code |
| wfhmm_s2d.conditional.expectation | Source code |
| wfhmm_s2d.forward | Source code |
| wfhmm_s2d.forward.backwards | Source code |
| wfhmm_s2d.transition | Source code |
| wfhmm_s2d.viterbi | Source code |
| write.simulation.log | Source code |
