API for matteocereda/ceredaR
Utilitis needed to work with Matteo Cereda
| Global functions | |
|---|---|
| filter_mutect_1 | Source code |
| filter_varscan_2 | Source code |
| filter_varscan_no_normal | Source code |
| get_HGNC_isoform | Source code |
| get_VarScan | Source code |
| get_VarScan_somatic | Source code |
| get_coverage | Source code |
| get_hs_metrics | Source code |
| get_mutect | Source code |
| get_targeted_metrics | Source code |
| hs_metrics | Source code |
| lapply_pb | Source code |
| mapply_pb | Source code |
| merge | Source code |
| merge_mutect_varscan | Source code |
| merge_mutect_varscan_somatic | Source code |
| prepare_ANNOVAR_infile | Source code |
| read.varscan.somatic.vcf | Source code |
| read.varscan.vcf | Source code |
| set_annotations_after_ANNOVAR | Source code |
| set_damaging | Source code |
| set_genes_in_haloplex | Source code |
| setdec | Source code |
| write.bed | Source code |
