Man pages for mattmoo/daohtools
Tools for working with registry data and transforming to days alive and out of hospital (DAOH)
| calculate.daoh | Calculates the number of days each patient spent alive and... |
| calculate.dd | Calculcates the number of days each patient spent dead during... |
| calculate.dih | Calculcates the number of days each patient spent in hospital... |
| calculate.dra.risk.adjustment.glm | Calculates a GLM for using in the survey direct risk... |
| calculate.dra.weights | Generate weights for direct risk adjustment in each risk... |
| calculate.quantiles | Calculates the quantile for each of a list of numbers, can be... |
| calculate.summary.dt | Summarise a data.table |
| consolidate.events | Runs the functions necessary to merge events so that they do... |
| convert.date.cols | Convert dates of relevant columns by reference, so as not to... |
| convert.date.cols.auto | Tries to detect date columns by looking at the first entry.... |
| convert.date.cols.fasttime | Convert dates of relevant columns by reference, so as not to... |
| detect.overlapping.events | Merge overlapping admissions so that days are not counted... |
| encrypt.col | Encrypts a column (or columns) from a file, with a given... |
| generate.all.site.tsds | Generate timed sampling distributions for all sites in a |
| generate.dra.riskgp.columns | Generates risk group columns. |
| generate.quantreg.model | Generate a quantile regression model on which to risk adjust. |
| generate.riskgp.vector | Functions for generating the data needed for adjustment. |
| generate.site.tsd | Generate the timed sampling distributions from real data. |
| generate.smoothed.sampling.dist | Generates a smoothed sampling distribution (attempting to... |
| generate.timed.sampling.dist | Generate a timed.sampling.dist object from an input... |
| merge.and.crop.events | Crop the end date of each admission so that it is not outside... |
| modify.daoh.distribution | Modify a DAOH distribution, until at.quantile is... |
| modify.timed.daoh.distribution | Modify a timed DAOH distribution. |
| plot.daoh.barplot | Plot DAOH barplot. |
| plot.daoh.density | Plot DAOH in a density chart |
| plot.daoh.freqpoly | Plot DAOH in a frequency polygon |
| plot.daoh.histogram | Plot DAOH in a histogram |
| prune.events.to.period | Match index events to admissions that fall within the... |
| quantile.dist | Find a quantile from a sampling distribution. |
| quantile.dist.emp | Empirically a quantile from a sampling distribution. |
| risk.adjust.on.quantreg.model | Apply the quantile regression models to risk adjust a... |
| risk.adjust.quantreg | This function will ideally take an output variable name and a... |
| smooth.daoh | A smoothing function particularly for DAOH. |
| std.err | Calculate standard error, with or without NA |
