melinagallopin/appinetwork: construction and Analysis of Protein-Protein Interactions (PPI) networks for complexes and biological processes
This package is used to construct and analyse a network about PPI in cellular complexes or biological processes. There are functions to parse files, to construct network, to modelize assembly intermediary of complexes and to cluster network (TFit). Parse Databases : IrefIndex, Biogrid, Intact. Construct Thesaurus. Build Network. Analyse Network : Assembly intermediary + TFit clustering to find all interactants.
Getting started
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Package details |
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| Author | Marie-Hélène Mucchielli-Giorgi <marie-helene.mucchielli@i2bc.paris-saclay.fr> [aut], Annie Glatigny [ctb], Benjamin Auder <Benjamin.Auder@u-psud.fr> [ctb], Melina Gallopin <Melina.Gallopin@u-psud.fr> [ctb] |
| Maintainer | Marie-Hélène Mucchielli-Giorgi <marie-helene.mucchielli@i2bc.paris-saclay.fr> |
| License | CC0 |
| Version | 0.1.0 |
| URL | http://www.i2bc.paris-saclay.fr/?lang=en |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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