| %>% |
Man page
|
| .onAttach |
Source code
|
| .onLoad |
Source code
|
| BBI_ARGS |
Man page
|
| add_based_on |
Man page
Source code
|
| add_bbi_args |
Man page
Source code
|
| add_config |
Man page
Source code
|
| add_description |
Man page
Source code
|
| add_log_impl |
Man page
Source code
|
| add_log_recurse_dirs |
Source code
|
| add_model_status |
Man page
|
| add_na_filter |
Man page
Source code
|
| add_new_record |
Man page
Source code
|
| add_notes |
Man page
Source code
|
| add_param_shrinkage |
Man page
|
| add_run_id_col |
Man page
|
| add_simulation |
Man page
Source code
|
| add_star |
Man page
Source code
|
| add_summary |
Man page
Source code
|
| add_tags |
Man page
Source code
|
| add_tags_diff |
Man page
Source code
|
| add_to_path_message |
Man page
Source code
|
| adjust_data_path_ext |
Source code
|
| adjust_estimation_options |
Man page
Source code
|
| apply_indices |
Man page
Source code
|
| as_summary_list |
Man page
Source code
|
| as_summary_list.bbi_summary_log_df |
Man page
Source code
|
| assert_bbi_version |
Man page
Source code
|
| assert_nm_table_format |
Man page
Source code
|
| assert_record_type |
Man page
Source code
|
| batch_submit_bg |
Source code
|
| batch_submit_iter_msg |
Source code
|
| bbi_current_release |
Man page
Source code
|
| bbi_dry_run |
Man page
Source code
|
| bbi_exec |
Man page
Source code
|
| bbi_exec_model_summaries |
Source code
|
| bbi_help |
Man page
Source code
|
| bbi_init |
Man page
Source code
|
| bbi_nonmem_model_status |
Man page
Source code
|
| bbi_nonmem_model_status.bbi_model |
Man page
Source code
|
| bbi_nonmem_model_status.bbi_nmboot_model |
Man page
Source code
|
| bbi_version |
Man page
Source code
|
| bbr |
Man page
|
| block |
Man page
Source code
|
| bootstrap_can_be_summarized |
Source code
|
| bootstrap_estimates |
Man page
Source code
|
| bootstrap_is_cleaned_up |
Source code
|
| build_bbi_install_path |
Man page
Source code
|
| build_bbi_param_list |
Man page
Source code
|
| build_matrix_indices |
Man page
Source code
|
| build_new_model_path |
Man page
Source code
|
| build_path_from_model |
Man page
Source code
|
| build_path_from_model.bbi_model |
Man page
Source code
|
| check_bbi_args |
Man page
Source code
|
| check_bbi_exe |
Man page
Source code
|
| check_bbi_run_log_df_object |
Man page
|
| check_cor_threshold |
Man page
Source code
|
| check_ext |
Man page
Source code
|
| check_ext.bbi_nonmem_model |
Man page
Source code
|
| check_ext.bbi_nonmem_summary |
Man page
Source code
|
| check_ext.character |
Man page
Source code
|
| check_file |
Man page
Source code
|
| check_for_existing_model |
Man page
Source code
|
| check_for_model_tree_pkgs |
Man page
Source code
|
| check_grd |
Man page
Source code
|
| check_grd.bbi_nonmem_model |
Man page
Source code
|
| check_grd.bbi_nonmem_summary |
Man page
Source code
|
| check_grd.character |
Man page
Source code
|
| check_lst_file |
Man page
Source code
|
| check_mode_argument |
Man page
Source code
|
| check_model_for_sim |
Man page
Source code
|
| check_model_object |
Man page
|
| check_model_object_list |
Man page
|
| check_model_tree |
Source code
|
| check_nonmem_finished |
Man page
Source code
|
| check_nonmem_finished.bbi_base_model |
Source code
|
| check_nonmem_finished.list |
Source code
|
| check_nonmem_table_bbi |
Man page
Source code
|
| check_nonmem_table_output |
Man page
Source code
|
| check_os |
Man page
|
| check_output_dir |
Man page
Source code
|
| check_output_dir.bbi_model |
Man page
Source code
|
| check_output_dir.character |
Man page
Source code
|
| check_record_val |
Man page
Source code
|
| check_run_times |
Man page
Source code
|
| check_status_code |
Man page
Source code
|
| check_up_to_date |
Man page
Source code
|
| check_up_to_date.bbi_base_model |
Man page
Source code
|
| check_up_to_date.bbi_log_df |
Source code
|
| check_up_to_date.bbi_nmboot_model |
Man page
Source code
|
| check_up_to_date.bbi_nonmem_summary |
Man page
Source code
|
| check_up_to_date_nonmem |
Man page
Source code
|
| check_yaml_in_sync |
Man page
Source code
|
| clean_ctl |
Man page
Source code
|
| cleanup_bootstrap_run |
Man page
Source code
|
| collapse_to_string |
Man page
Source code
|
| color_model_type |
Man page
Source code
|
| color_model_type.bbi_base_model |
Source code
|
| color_status |
Man page
Source code
|
| color_tree_by |
Source code
|
| combine_list_objects |
Man page
|
| compare_bbi_version |
Source code
|
| config_log |
Man page
Source code
|
| config_log_entry |
Man page
Source code
|
| config_log_impl |
Man page
Source code
|
| config_log_make_entry |
Man page
Source code
|
| config_log_make_entry.bbi_nmboot_model |
Man page
Source code
|
| config_log_make_entry.bbi_nonmem_model |
Man page
Source code
|
| config_log_make_entry.default |
Man page
Source code
|
| copy_control_stream |
Man page
Source code
|
| copy_model_from |
Man page
Source code
|
| copy_model_from.bbi_nonmem_model |
Man page
Source code
|
| copy_model_from_impl |
Man page
Source code
|
| cov_cor |
Man page
Source code
|
| cov_cor.bbi_nonmem_model |
Man page
Source code
|
| cov_cor.bbi_nonmem_summary |
Man page
Source code
|
| create_bbi_object |
Man page
|
| create_config_log_object |
Man page
Source code
|
| create_log_df_impl |
Man page
Source code
|
| create_model_hook |
Man page
Source code
|
| create_model_hook.bbi_nmboot_model |
Man page
Source code
|
| create_model_hook.bbi_nmsim_model |
Man page
Source code
|
| create_model_hook.bbi_nonmem_model |
Man page
Source code
|
| create_model_hook.default |
Man page
Source code
|
| create_model_object |
Man page
Source code
|
| create_process_object |
Man page
Source code
|
| create_run_log_object |
Man page
Source code
|
| create_summary_list |
Man page
Source code
|
| create_summary_log_object |
Man page
Source code
|
| create_summary_object |
Man page
Source code
|
| ctl_ext |
Man page
Source code
|
| current_release_url |
Man page
Source code
|
| delete_models |
Man page
Source code
|
| dev_error |
Man page
|
| do_if_bbi_sum |
Source code
|
| download_bbi |
Man page
Source code
|
| download_with_retry |
Man page
|
| drop_dups |
Man page
Source code
|
| execute_nmtran |
Man page
Source code
|
| extract_condition_number |
Man page
Source code
|
| extract_details |
Man page
Source code
|
| extract_from_summary |
Man page
|
| extract_heuristics |
Man page
Source code
|
| extract_ofv |
Man page
Source code
|
| extract_param_count |
Man page
Source code
|
| file_edit |
Source code
|
| file_matches |
Man page
|
| file_matches_string |
Man page
|
| filter_nm_data |
Man page
Source code
|
| find_models |
Man page
Source code
|
| find_nonmem_model_file_path |
Man page
Source code
|
| fmt_record_num |
Man page
Source code
|
| format_cmd_args |
Man page
Source code
|
| format_matrix |
Man page
Source code
|
| format_model_summary_error |
Source code
|
| format_model_type |
Man page
Source code
|
| get_based_on |
Man page
Source code
|
| get_based_on.bbi_run_log_df |
Man page
Source code
|
| get_based_on.character |
Man page
Source code
|
| get_based_on.default |
Man page
Source code
|
| get_bbi_yaml_path |
Source code
|
| get_boot_models |
Man page
Source code
|
| get_boot_spec |
Man page
Source code
|
| get_config_path |
Man page
Source code
|
| get_config_path.bbi_log_df |
Source code
|
| get_config_path.bbi_model |
Source code
|
| get_config_path.bbi_nmboot_model |
Source code
|
| get_config_path.bbi_nonmem_summary |
Source code
|
| get_config_path_nonmem |
Source code
|
| get_data_filter_exprs |
Source code
|
| get_data_path |
Man page
Source code
|
| get_data_path.bbi_log_df |
Source code
|
| get_data_path.bbi_model |
Source code
|
| get_data_path.bbi_nmboot_model |
Source code
|
| get_data_path.bbi_nmsim_model |
Source code
|
| get_data_path.bbi_nonmem_model |
Source code
|
| get_data_path.bbi_nonmem_summary |
Source code
|
| get_data_path_from_ctl |
Source code
|
| get_data_path_from_json |
Source code
|
| get_data_path_nonmem |
Source code
|
| get_initial_est |
Source code
|
| get_input_columns |
Man page
Source code
|
| get_model_ancestry |
Man page
Source code
|
| get_model_ancestry.bbi_run_log_df |
Man page
Source code
|
| get_model_ancestry.character |
Man page
Source code
|
| get_model_ancestry.default |
Man page
Source code
|
| get_model_ctl |
Man page
Source code
|
| get_model_id |
Man page
Source code
|
| get_model_id.bbi_model |
Man page
Source code
|
| get_model_id.character |
Man page
Source code
|
| get_model_path |
Man page
Source code
|
| get_model_path.bbi_log_df |
Source code
|
| get_model_path.bbi_model |
Source code
|
| get_model_path.bbi_nonmem_summary |
Source code
|
| get_model_path_nonmem |
Source code
|
| get_model_status |
Man page
Source code
|
| get_model_status.default |
Source code
|
| get_model_working_directory |
Man page
Source code
|
| get_mpiexec_path |
Source code
|
| get_msf_path |
Man page
Source code
|
| get_next_integer |
Man page
Source code
|
| get_omega |
Man page
Source code
|
| get_output_dir |
Man page
Source code
|
| get_output_dir.bbi_log_df |
Source code
|
| get_output_dir.bbi_model |
Source code
|
| get_output_dir.bbi_nonmem_summary |
Source code
|
| get_output_dir_nonmem |
Source code
|
| get_param |
Man page
Source code
|
| get_path_from_log_df |
Man page
Source code
|
| get_path_from_object |
Man page
|
| get_records |
Man page
Source code
|
| get_sigma |
Man page
Source code
|
| get_sim_replicate_record |
Man page
Source code
|
| get_sim_spec |
Man page
Source code
|
| get_simulation |
Man page
Source code
|
| get_spec_path |
Man page
Source code
|
| get_spec_path.bbi_base_model |
Man page
Source code
|
| get_spec_path.bbi_nmboot_model |
Man page
Source code
|
| get_table_columns |
Man page
Source code
|
| get_theta |
Man page
Source code
|
| get_theta_inits |
Man page
Source code
|
| get_yaml_path |
Man page
Source code
|
| get_yaml_path.bbi_log_df |
Source code
|
| get_yaml_path.bbi_model |
Source code
|
| get_yaml_path.bbi_nonmem_summary |
Source code
|
| get_yaml_path_nonmem |
Source code
|
| has_simulation |
Man page
Source code
|
| highlight_cell |
Man page
Source code
|
| inherit_param_estimates |
Man page
Source code
|
| initial_estimates |
Man page
Source code
|
| install_menu |
Man page
Source code
|
| invert_operator |
Man page
Source code
|
| is_diag |
Man page
|
| is_valid_nonmem_extension |
Man page
Source code
|
| is_valid_yaml_extension |
Man page
Source code
|
| make_boot_run |
Man page
Source code
|
| make_boot_spec |
Man page
Source code
|
| make_model_network |
Source code
|
| make_sim_spec |
Man page
Source code
|
| make_tree_data |
Man page
Source code
|
| make_tree_tooltip |
Source code
|
| map_list_recursive |
Man page
|
| matrix_to_df |
Source code
|
| mod_ext |
Man page
Source code
|
| mod_has_record |
Man page
Source code
|
| mod_list_setup |
Man page
Source code
|
| model_diff |
Man page
Source code
|
| model_diff.bbi_nmboot_model |
Man page
Source code
|
| model_diff.bbi_nmsim_model |
Man page
Source code
|
| model_diff.bbi_nonmem_model |
Man page
Source code
|
| model_diff_get_comp |
Man page
Source code
|
| model_diff_impl |
Man page
Source code
|
| model_is_finished |
Man page
Source code
|
| model_status |
Man page
|
| model_summaries |
Man page
Source code
|
| model_summaries.bbi_run_log_df |
Man page
Source code
|
| model_summaries.list |
Man page
Source code
|
| model_summaries_bbi_concurrent |
Source code
|
| model_summaries_bbi_serial |
Source code
|
| model_summaries_onetry |
Source code
|
| model_summary |
Man page
Source code
|
| model_summary.bbi_nmboot_model |
Source code
|
| model_summary.bbi_nmsim_model |
Source code
|
| model_summary.bbi_nonmem_model |
Man page
Source code
|
| model_tree |
Man page
Source code
|
| model_tree.bbi_log_df |
Source code
|
| model_tree.character |
Source code
|
| model_tree_png |
Man page
Source code
|
| model_type_to_classes |
Source code
|
| modify_based_on |
Man page
|
| modify_bbi_args |
Man page
|
| modify_data_path_ctl |
Man page
Source code
|
| modify_description |
Man page
|
| modify_model_field |
Man page
Source code
|
| modify_model_field_lgl |
Man page
Source code
|
| modify_notes |
Man page
|
| modify_prob_statement |
Man page
Source code
|
| modify_records |
Man page
|
| modify_star |
Man page
|
| modify_tags |
Man page
|
| na_to_null |
Man page
|
| new_bootstrap_run |
Man page
Source code
|
| new_ext |
Man page
Source code
|
| new_model |
Man page
Source code
|
| new_sim_model |
Man page
Source code
|
| nm_data |
Man page
Source code
|
| nm_file |
Man page
Source code
|
| nm_file.bbi_model |
Source code
|
| nm_file.character |
Source code
|
| nm_file_impl |
Man page
Source code
|
| nm_file_multi_tab |
Man page
Source code
|
| nm_grd |
Man page
Source code
|
| nm_join |
Man page
Source code
|
| nm_join_impl |
Man page
Source code
|
| nm_join_sim |
Man page
Source code
|
| nm_par_tab |
Man page
Source code
|
| nm_tab |
Man page
Source code
|
| nm_table_files |
Man page
Source code
|
| nm_tables |
Man page
Source code
|
| nmtran_setup |
Man page
Source code
|
| nonmem_summary |
Man page
Source code
|
| open_model_file |
Man page
Source code
|
| pad_left |
Source code
|
| param_estimates |
Man page
Source code
|
| param_estimates.bbi_nonmem_summary |
Man page
Source code
|
| param_estimates_batch |
Man page
Source code
|
| param_estimates_compare |
Man page
|
| param_estimates_compare.bbi_nmboot_summary |
Man page
|
| param_estimates_compare.default |
Man page
|
| param_labels |
Man page
Source code
|
| param_labels.bbi_nonmem_model |
Man page
Source code
|
| param_labels.character |
Man page
Source code
|
| parse_args_list |
Man page
|
| parse_cov_cor_full_file |
Man page
Source code
|
| parse_ctl_to_list |
Man page
|
| parse_nmtran_args |
Man page
Source code
|
| parse_param_comment |
Man page
Source code
|
| parse_same_block |
Man page
Source code
|
| plot_ext |
Man page
Source code
|
| plot_grd |
Man page
Source code
|
| plot_nonmem_table_df |
Man page
Source code
|
| print.bbi_model |
Man page
Source code
|
| print.bbi_nmboot_summary |
Man page
Source code
|
| print.bbi_nonmem_summary |
Man page
Source code
|
| print.bbi_process |
Man page
Source code
|
| print.model_tree_static |
Man page
Source code
|
| print.nmtran_process |
Man page
Source code
|
| print_bbi |
Man page
|
| print_bbi_args |
Man page
|
| print_model_files |
Man page
Source code
|
| print_model_files.default |
Source code
|
| prune_nested_models |
Source code
|
| read_bbi_path |
Man page
Source code
|
| read_data_record |
Source code
|
| read_model |
Man page
Source code
|
| reconcile_yaml |
Man page
Source code
|
| register_model_type |
Man page
Source code
|
| remove_based_on |
Man page
Source code
|
| remove_dup_cols |
Man page
|
| remove_notes |
Man page
Source code
|
| remove_records |
Man page
Source code
|
| remove_star |
Man page
Source code
|
| remove_tags |
Man page
Source code
|
| replace_all_based_on |
Man page
Source code
|
| replace_all_bbi_args |
Man page
Source code
|
| replace_all_notes |
Man page
Source code
|
| replace_all_tags |
Man page
Source code
|
| replace_description |
Man page
Source code
|
| replace_model_field |
Man page
Source code
|
| replace_note |
Man page
Source code
|
| replace_tag |
Man page
Source code
|
| req_tree_pkgs |
Man page
Source code
|
| resolve_nonmem_version |
Man page
Source code
|
| run_log |
Man page
Source code
|
| run_log_entry |
Man page
Source code
|
| run_nmtran |
Man page
Source code
|
| safe_based_on |
Man page
Source code
|
| safe_read_model |
Man page
Source code
|
| sanitize_file_extension |
Man page
Source code
|
| save_model_yaml |
Man page
Source code
|
| select_registry |
Source code
|
| set_bbi_null |
Man page
|
| setup_bootstrap_run |
Man page
Source code
|
| setup_sim_run |
Man page
Source code
|
| sig |
Man page
Source code
|
| simulate |
Man page
|
| size_tree_by |
Source code
|
| skip_if_not_ci_or_metworx |
Man page
Source code
|
| skip_if_old_bbi |
Man page
Source code
|
| skip_if_old_nmrec |
Man page
Source code
|
| skip_if_over_rate_limit |
Man page
Source code
|
| skip_if_tree_missing_deps |
Man page
Source code
|
| skip_long_tests |
Man page
Source code
|
| stop_get_fail_msg |
Man page
|
| stop_get_scalar_msg |
Man page
|
| stop_if_tree_missing_deps |
Man page
Source code
|
| strict_mode_error |
Man page
|
| style_html |
Man page
Source code
|
| submit_model |
Man page
Source code
|
| submit_model.bbi_base_model |
Man page
Source code
|
| submit_model.bbi_nmboot_model |
Man page
Source code
|
| submit_model.bbi_nmsim_model |
Man page
Source code
|
| submit_models |
Man page
Source code
|
| submit_models.bbi_nonmem_models |
Source code
|
| submit_models.default |
Source code
|
| submit_models.list |
Man page
Source code
|
| submit_nonmem_model |
Man page
Source code
|
| summarize_bootstrap |
Man page
|
| summarize_bootstrap_run |
Man page
Source code
|
| summary_log |
Man page
Source code
|
| summary_log_impl |
Man page
Source code
|
| suppressSpecificWarning |
Man page
|
| tags_diff |
Man page
Source code
|
| tags_diff.bbi_model |
Source code
|
| tags_diff.bbi_run_log_df |
Source code
|
| tail_lst |
Man page
Source code
|
| tail_lst.bbi_base_model |
Man page
Source code
|
| tail_lst.character |
Man page
Source code
|
| tail_output |
Man page
Source code
|
| tail_output.bbi_base_model |
Man page
Source code
|
| tail_output.character |
Man page
Source code
|
| test_bbi_version |
Man page
Source code
|
| test_nmrec_version |
Man page
Source code
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| test_threads |
Man page
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| translate_nm_expr |
Man page
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| translate_nm_operator |
Man page
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| try_path_real |
Source code
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| tweak_initial_estimates |
Man page
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| tweak_thetas |
Man page
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| tweak_values |
Source code
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| unnest_based_on |
Source code
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| unquote_filename |
Man page
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| update_model_id |
Man page
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| use_bbi |
Man page
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| using_old_priors |
Man page
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| validate_parent_mod |
Man page
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| verbose_msg |
Man page
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| verify_model_yaml_integrity |
Man page
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| version_message |
Man page
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| wait_for_nonmem |
Man page
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| wait_for_nonmem.default |
Source code
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| yaml_ext |
Man page
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|
