Files in mi-erasmusmc/CovCoagFullGradientBoostingPrediction
Coagulopathy prediction in SARS-Cov-2
.Rbuildignore
.Rprofile
.gitignore
CovCoagFullGradientBoostingPrediction.Rproj
DESCRIPTION
HydraConfig.json
NAMESPACE
R/AgeCovariateCode.R
R/CohortCovariateCode.R
R/CovCoagFullGradientBoostingPrediction.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/Helpers.R
R/Main.R
R/MeasurementCohortCovariateCode.R
R/MeasurementCovariateCode.R
R/PackageResults.R
R/SubmitResults.R
R/createDocument.R
R/createPlpProtocol.R
R/createValidationPackageJson.R
R/createValidationPackageOld.R
R/populateShinyApp.R
R/readJson.R
STUDY-PACKAGE-BUILD.md
STUDY-PACKAGE-EXECUTE.md
STUDY-PACKAGE-SETUP.md
STUDY-PACKAGE-SHARE.md
extras/CodeToRun.R
extras/CreatePredictionAnalysisDetails.R
extras/JsonCreation/CovCoagFullGradientBoostingJson.R
extras/PackageMaintenance.R
extras/PopulateCustomCovariates.R
extras/createLockfiles.R
extras/createPredSkelJson.R
extras/examplePredSkelJson.R
extras/packageDeps.R
extras/populateMultipleShiny.R
inst/cohorts/COVID19_PCR_positive_test_or_diagnosis.json
inst/cohorts/DTH.json
inst/cohorts/DVT_narrow.json
inst/cohorts/IS.json
inst/cohorts/MI.json
inst/cohorts/MI_and_IS.json
inst/cohorts/PE.json
inst/cohorts/STR.json
inst/cohorts/Unvaccinated_COVID19_PCR_positive_test_or_diagnosis.json
inst/cohorts/Unvaccinated_COVID19_PCR_positive_test_or_diagnosis__age_65_and_above.json
inst/cohorts/Unvaccinated_COVID19_PCR_positive_test_or_diagnosis__age_below_65.json
inst/cohorts/VTE_narrow.json
inst/doc/AddingCohortCovariates.pdf
inst/doc/CreatingStudyPackageInR.pdf
inst/doc/UsingSkeletonPackage.pdf
inst/settings/CohortsToCreate.csv
inst/settings/predictionAnalysisList.json
inst/sql/sql_server/COVID19_PCR_positive_test_or_diagnosis.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/DTH.sql
inst/sql/sql_server/DVT_narrow.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/IS.sql
inst/sql/sql_server/MI.sql
inst/sql/sql_server/MI_and_IS.sql
inst/sql/sql_server/PE.sql
inst/sql/sql_server/STR.sql
inst/sql/sql_server/Unvaccinated_COVID19_PCR_positive_test_or_diagnosis.sql
inst/sql/sql_server/Unvaccinated_COVID19_PCR_positive_test_or_diagnosis__age_65_and_above.sql
inst/sql/sql_server/Unvaccinated_COVID19_PCR_positive_test_or_diagnosis__age_below_65.sql
inst/sql/sql_server/VTE_narrow.sql
man/CovCoagFullGradientBoostingPrediction.Rd
man/createCohorts.Rd
man/createJournalDocument.Rd
man/createMultiPlpReport.Rd
man/createPlpProtocol.Rd
man/execute.Rd
man/getAgeCovariateData.Rd
man/getCohortCovariateData.Rd
man/getMeasurementCohortCovariateData.Rd
man/getMeasurementCovariateData.Rd
man/packageResults.Rd
man/populateShinyApp.Rd
man/submitResults.Rd
pyEnvironment.yml
readme.md
readmeSharing.md
renv.lock
vignettes/AddingCohortCovariates.Rmd
vignettes/CreatingStudyPackageInR.Rmd
vignettes/Figure1.png
vignettes/UsingSkeletonPackage.Rmd
