Man pages for michaelwitting/genedataRutils
Collection of utility functions to work with .gda files in R
| addMetid | Compare against a MS2 library |
| annotateMz | Annotate MS1 data |
| compareSpectraLibrary | Compare against a MS2 library |
| correctRtime | Correction of retention time in Spectra objects |
| createGnpsFiles | Reformat .gda and MS2 spectra for GNPS FBMN |
| createMtblsMetaboliteFile | Writing template for Metabolights metabolite file |
| createMtblsSampleFile | Writing template for Metabolights sample file |
| exportMgf | Exporting Spectra as .mgf file |
| fillMs1Spectra | Fill with empty MS2 spectra |
| fillMs2Spectra | Fill with empty MS2 spectra |
| getColAnno | Get column annotation data from read .gda file |
| getMsData | Get feature data from read .gda file |
| getRowAnno | Get row annotation data from read .gda file |
| matchIonMode | Compare against a MS2 library |
| ms2AddId | Add MS1 ID to MS2 spectra |
| ms2AddId2 | Add MS1 ID to MS2 spectra |
| readGda | Importing Genedata Expressionist for MS .gda files |
| reconstructIsoPattern | Reconstructing Isotope Pattern from MS1 data |
| removeCluster | Remove specific cluster from data |
| removeSamples | Remove specific samples from data |
| setColAnno | Sets feature data from read .gda file |
| setMsData | Sets feature data from read .gda file |
| setRowAnno | Sets row annotation data from read .gda file |
| writeGda | Write .gda file |
| writeSiriusFile | Importing Genedata Expressionist for MS .gda files |
