microbialman/IgAScores: Score Taxon-Level IgA Binding in IgA-Seq Experiments

Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.

install.packages("remotes")
remotes::install_github("microbialman/IgAScores")