API for mikemc/speedyseq
Faster implementations of phyloseq functions

Global functions
%>%	Man page
.onLoad	Source code
as_tibble	Man page
as_tibble-phyloseq	Man page
as_tibble.XStringSet	Man page
as_tibble.otu_table	Man page Source code
as_tibble.phyloseq	Man page
as_tibble.sample_data	Man page
as_tibble.taxonomyTable	Man page
bad_flush_right	Man page
bad_or_unique	Man page
filter-phyloseq	Man page
filter_sample_data	Man page
filter_sample_data,phyloseq-method	Man page
filter_sample_data,sample_data-method	Man page
filter_tax_table	Man page
filter_tax_table,phyloseq-method	Man page
filter_tax_table,taxonomyTable-method	Man page
filter_taxa	Man page Source code
filter_taxa2	Man page Source code
glimpse.sample_data	Source code
glimpse.taxonomyTable	Source code
import_phyloseq_functions	Man page
inner_join_sample_data	Man page
inner_join_sample_data,phyloseq-method	Man page
inner_join_sample_data,sample_data-method	Man page
inner_join_tax_table	Man page
inner_join_tax_table,phyloseq-method	Man page
inner_join_tax_table,taxonomyTable-method	Man page
join-phyloseq	Man page
left_join_sample_data	Man page
left_join_sample_data,phyloseq-method	Man page
left_join_sample_data,sample_data-method	Man page
left_join_tax_table	Man page
left_join_tax_table,phyloseq-method	Man page
left_join_tax_table,taxonomyTable-method	Man page
merge_groups	Man page
merge_samples2	Man page
merge_samples2,otu_table-method	Man page
merge_samples2,phyloseq-method	Man page
merge_samples2,sample_data-method	Man page
merge_taxa_vec	Man page
merge_taxa_vec,XStringSet-method	Man page
merge_taxa_vec,otu_table-method	Man page
merge_taxa_vec,phylo-method	Man page
merge_taxa_vec,phyloseq-method	Man page
merge_taxa_vec,taxonomyTable-method	Man page
merge_taxa_vec_pseudo	Man page
mutate-phyloseq	Man page
mutate_sample_data	Man page
mutate_sample_data,phyloseq-method	Man page
mutate_sample_data,sample_data-method	Man page
mutate_tax_table	Man page
mutate_tax_table,phyloseq-method	Man page
mutate_tax_table,taxonomyTable-method	Man page
oneline	Man page Source code
oneline.XStringSet	Source code
oneline.otu_table	Source code
oneline.phylo	Source code
oneline.sample_data	Source code
oneline.taxonomyTable	Source code
orient_taxa	Man page
orient_taxa,otu_table-method	Man page
orient_taxa,phyloseq-method	Man page
orient_taxa_default	Source code
otu_table,tbl_df-method	Man page
plot_bar	Man page Source code
plot_heatmap	Man page Source code
plot_tree	Man page Source code
print.otu_table	Source code
print.sample_data	Source code
print.taxonomyTable	Source code
psmelt	Man page Source code
reexports	Man page
relocate-phyloseq	Man page
relocate_sample_data	Man page
relocate_sample_data,phyloseq-method	Man page
relocate_sample_data,sample_data-method	Man page
relocate_tax_table	Man page
relocate_tax_table,phyloseq-method	Man page
relocate_tax_table,taxonomyTable-method	Man page
rename-phyloseq	Man page
rename_sample_data	Man page
rename_sample_data,phyloseq-method	Man page
rename_sample_data,sample_data-method	Man page
rename_tax_table	Man page
rename_tax_table,phyloseq-method	Man page
rename_tax_table,taxonomyTable-method	Man page
rename_with_sample_data	Man page
rename_with_sample_data,phyloseq-method	Man page
rename_with_sample_data,sample_data-method	Man page
rename_with_tax_table	Man page
rename_with_tax_table,phyloseq-method	Man page
rename_with_tax_table,taxonomyTable-method	Man page
sample_data,tbl_df-method	Man page
sample_data_stable	Man page
select-phyloseq	Man page
select_sample_data	Man page
select_sample_data,phyloseq-method	Man page
select_sample_data,sample_data-method	Man page
select_tax_table	Man page
select_tax_table,phyloseq-method	Man page
select_tax_table,taxonomyTable-method	Man page
select_taxa	Man page
select_taxa,XStringSet,character-method	Man page
select_taxa,otu_table,character-method	Man page
select_taxa,phylo,character-method	Man page
select_taxa,phyloseq,character-method	Man page
select_taxa,sample_data,character-method	Man page
select_taxa,taxonomyTable,character-method	Man page
show,otu_table-method	Man page
show,phyloseq-method	Man page
show,sample_data-method	Man page
show,taxonomyTable-method	Man page
tax_glom	Man page Source code
tax_table,tbl_df-method	Man page
tibble-constructors	Man page
tibble_print	Man page Source code
tip_glom	Man page Source code
transform_sample_counts	Man page Source code
transmute_sample_data	Man page
transmute_sample_data,phyloseq-method	Man page
transmute_sample_data,sample_data-method	Man page
transmute_tax_table	Man page
transmute_tax_table,phyloseq-method	Man page
transmute_tax_table,taxonomyTable-method	Man page
tree_glom	Man page Source code
unique_or_na	Man page