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.RData
.Rbuildignore
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.Rproj.user/2B1B628E/console06/INDEX001
.Rproj.user/2B1B628E/cpp-definition-cache
.Rproj.user/2B1B628E/pcs/debug-breakpoints.pper
.Rproj.user/2B1B628E/pcs/files-pane.pper
.Rproj.user/2B1B628E/pcs/source-pane.pper
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.Rproj.user/2B1B628E/pcs/workbench-pane.pper
.Rproj.user/2B1B628E/rmd-outputs
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DESCRIPTION
NAMESPACE
R/.RData
R/Retrospective-20191029T173137Z-001.zip
R/Retrospective/00_Merged_Retro_analysis_examples.R R/Retrospective/Likelihood/02_summaryplot_likelihood.r
R/Retrospective/Retro/00_Dos.bat
R/Retrospective/Retro/00_clean_all.bat
R/Retrospective/Retro/00_run_SS_v_3_30_08.bat
R/Retrospective/Retro/00_run_local.bat
R/Retrospective/Retro/00_run_local_no_hess.bat
R/Retrospective/Retro/00_run_local_pipe.bat
R/Retrospective/Retro/CompReport.sso
R/Retrospective/Retro/CumReport.sso
R/Retrospective/Retro/Forecast-report.sso
R/Retrospective/Retro/ParmTrace.sso
R/Retrospective/Retro/Report.sso
R/Retrospective/Retro/SIS_table.sso
R/Retrospective/Retro/_Rhistory
R/Retrospective/Retro/admodel.cov
R/Retrospective/Retro/admodel.dep
R/Retrospective/Retro/admodel.hes
R/Retrospective/Retro/checkup.sso
R/Retrospective/Retro/control.ss
R/Retrospective/Retro/control.ss_new
R/Retrospective/Retro/covar.sso
R/Retrospective/Retro/data.ss
R/Retrospective/Retro/data.ss_new
R/Retrospective/Retro/derived_posteriors.sso
R/Retrospective/Retro/echoinput.sso
R/Retrospective/Retro/fmin.log
R/Retrospective/Retro/forecast.ss
R/Retrospective/Retro/forecast.ss_new
R/Retrospective/Retro/gradient.1
R/Retrospective/Retro/gradient.2
R/Retrospective/Retro/gradient.3
R/Retrospective/Retro/gradient.4
R/Retrospective/Retro/gradient.5
R/Retrospective/Retro/gradient.dat
R/Retrospective/Retro/posterior_obj_func.sso
R/Retrospective/Retro/posterior_vectors.sso
R/Retrospective/Retro/posteriors.sso
R/Retrospective/Retro/rebuild.sso
R/Retrospective/Retro/runnumber.ss
R/Retrospective/Retro/ss.b01
R/Retrospective/Retro/ss.b02
R/Retrospective/Retro/ss.b03
R/Retrospective/Retro/ss.b04
R/Retrospective/Retro/ss.b05
R/Retrospective/Retro/ss.bar
R/Retrospective/Retro/ss.cor
R/Retrospective/Retro/ss.eva
R/Retrospective/Retro/ss.exe
R/Retrospective/Retro/ss.log
R/Retrospective/Retro/ss.p01
R/Retrospective/Retro/ss.p02
R/Retrospective/Retro/ss.p03
R/Retrospective/Retro/ss.p04
R/Retrospective/Retro/ss.p05
R/Retrospective/Retro/ss.par
R/Retrospective/Retro/ss.r01
R/Retrospective/Retro/ss.r02
R/Retrospective/Retro/ss.r03
R/Retrospective/Retro/ss.r04
R/Retrospective/Retro/ss.r05
R/Retrospective/Retro/ss.rep
R/Retrospective/Retro/ss.std
R/Retrospective/Retro/ss_summary.sso
R/Retrospective/Retro/starter.ss
R/Retrospective/Retro/starter.ss_new
R/Retrospective/Retro/warning.sso
R/Retrospective/Retro/wtatage.ss_new
R/Retrospective/Retrospective/CONTROL.SS
R/Retrospective/Retrospective/DATA.SS
R/Retrospective/Retrospective/SS.exe
R/Retrospective/Retrospective/forecast.ss
R/Retrospective/Retrospective/plots_1/00_SSmohnsrho.txt
R/Retrospective/Retrospective/plots_1/Retrospective_dev_plots.pdf
R/Retrospective/Retrospective/plots_1/Retrospective_dev_plots_scaled.png
R/Retrospective/Retrospective/plots_1/Retrospective_dev_plots_unscaled.png
R/Retrospective/Retrospective/plots_1/compare10_recdevs_uncertainty.png
R/Retrospective/Retrospective/plots_1/compare11_indices_flt.png
R/Retrospective/Retrospective/plots_1/compare11_indices_flt13.png
R/Retrospective/Retrospective/plots_1/compare11_indices_flt14.png
R/Retrospective/Retrospective/plots_1/compare11_indices_flt15.png
R/Retrospective/Retrospective/plots_1/compare11_indices_flt16.png
R/Retrospective/Retrospective/plots_1/compare11_indices_flt17.png
R/Retrospective/Retrospective/plots_1/compare11_indices_flt18.png
R/Retrospective/Retrospective/plots_1/compare12_indices_log_flt.png
R/Retrospective/Retrospective/plots_1/compare12_indices_log_flt13.png
R/Retrospective/Retrospective/plots_1/compare12_indices_log_flt14.png
R/Retrospective/Retrospective/plots_1/compare12_indices_log_flt15.png
R/Retrospective/Retrospective/plots_1/compare12_indices_log_flt16.png
R/Retrospective/Retrospective/plots_1/compare12_indices_log_flt17.png
R/Retrospective/Retrospective/plots_1/compare12_indices_log_flt18.png
R/Retrospective/Retrospective/plots_1/compare13_phase_plot.png
R/Retrospective/Retrospective/plots_1/compare14_densities_SR_LN(R0).png
R/Retrospective/Retrospective/plots_1/compare14_densities_SSB_Virgin.png
R/Retrospective/Retrospective/plots_1/compare15_densities_SR_LN(R0).png
R/Retrospective/Retrospective/plots_1/compare15_densities_SSB_Virgin.png
R/Retrospective/Retrospective/plots_1/compare18_Fvalue_uncertainty.png
R/Retrospective/Retrospective/plots_1/compare1_spawnbio.png
R/Retrospective/Retrospective/plots_1/compare2_spawnbio_uncertainty.png
R/Retrospective/Retrospective/plots_1/compare3_Bratio.png
R/Retrospective/Retrospective/plots_1/compare4_Bratio_uncertainty.png
R/Retrospective/Retrospective/plots_1/compare5_SPRratio.png
R/Retrospective/Retrospective/plots_1/compare6_SPRratio_uncertainty.png
R/Retrospective/Retrospective/plots_1/compare7_recruits.png
R/Retrospective/Retrospective/plots_1/compare8_recruits_uncertainty.png
R/Retrospective/Retrospective/plots_1/compare9_recdevs.png
R/Retrospective/Retrospective/plots_1/retro 20191019_1558.RData
R/Retrospective/Retrospective/plots_2/SSplotComparisons_19-Oct-2019_16.03.pdf
R/Retrospective/Retrospective/plots_2/compare10_recdevs_uncertainty.png
R/Retrospective/Retrospective/plots_2/compare11_indices_flt.png
R/Retrospective/Retrospective/plots_2/compare11_indices_flt13.png
R/Retrospective/Retrospective/plots_2/compare11_indices_flt14.png
R/Retrospective/Retrospective/plots_2/compare11_indices_flt15.png
R/Retrospective/Retrospective/plots_2/compare11_indices_flt16.png
R/Retrospective/Retrospective/plots_2/compare11_indices_flt17.png
R/Retrospective/Retrospective/plots_2/compare11_indices_flt18.png
R/Retrospective/Retrospective/plots_2/compare12_indices_log_flt.png
R/Retrospective/Retrospective/plots_2/compare12_indices_log_flt13.png
R/Retrospective/Retrospective/plots_2/compare12_indices_log_flt14.png
R/Retrospective/Retrospective/plots_2/compare12_indices_log_flt15.png
R/Retrospective/Retrospective/plots_2/compare12_indices_log_flt16.png
R/Retrospective/Retrospective/plots_2/compare12_indices_log_flt17.png
R/Retrospective/Retrospective/plots_2/compare12_indices_log_flt18.png
R/Retrospective/Retrospective/plots_2/compare13_phase_plot.png
R/Retrospective/Retrospective/plots_2/compare14_densities_SR_LN(R0).png
R/Retrospective/Retrospective/plots_2/compare14_densities_SSB_Virgin.png
R/Retrospective/Retrospective/plots_2/compare15_densities_SR_LN(R0).png
R/Retrospective/Retrospective/plots_2/compare15_densities_SSB_Virgin.png
R/Retrospective/Retrospective/plots_2/compare18_Fvalue_uncertainty.png
R/Retrospective/Retrospective/plots_2/compare1_spawnbio.png
R/Retrospective/Retrospective/plots_2/compare2_spawnbio_uncertainty.png
R/Retrospective/Retrospective/plots_2/compare3_Bratio.png
R/Retrospective/Retrospective/plots_2/compare4_Bratio_uncertainty.png
R/Retrospective/Retrospective/plots_2/compare5_SPRratio.png
R/Retrospective/Retrospective/plots_2/compare6_SPRratio_uncertainty.png
R/Retrospective/Retrospective/plots_2/compare7_recruits.png
R/Retrospective/Retrospective/plots_2/compare8_recruits_uncertainty.png
R/Retrospective/Retrospective/plots_2/compare9_recdevs.png
R/Retrospective/Retrospective/plots_2/likelihood_by_fleet_20191019_1603.csv
R/Retrospective/Retrospective/plots_3/01_FC_get_mohns_rho.txt
R/Retrospective/Retrospective/plots_3/02_DC_check_mohns_rho.txt
R/Retrospective/Retrospective/plots_3/SMA_SSF_SD.csv
R/Retrospective/Retrospective/plots_3/SMA_SSF_vals.csv
R/Retrospective/Retrospective/plots_3/SSB_total_wLINEmsy_Q50.png
R/Retrospective/Retrospective/plots_3/SSB_total_wLINEmsy_Q50_w_95_error.png
R/Retrospective/Retrospective/plots_3/SSBwLINEmsy.png
R/Retrospective/Retrospective/plots_3/SSBwLINEmsy_w_95_error.png
R/Retrospective/Retrospective/plots_3/SSplotComparisons_19-Oct-2019_16.07.pdf
R/Retrospective/Retrospective/plots_3/compare10_recdevs_uncertainty.png
R/Retrospective/Retrospective/plots_3/compare11_indices_flt.png
R/Retrospective/Retrospective/plots_3/compare12_indices_log_flt.png
R/Retrospective/Retrospective/plots_3/compare13_phase_plot.png
R/Retrospective/Retrospective/plots_3/compare14_densities_SR_LN(R0).png
R/Retrospective/Retrospective/plots_3/compare14_densities_SSB_Virgin.png
R/Retrospective/Retrospective/plots_3/compare15_densities_SR_LN(R0).png
R/Retrospective/Retrospective/plots_3/compare15_densities_SSB_Virgin.png
R/Retrospective/Retrospective/plots_3/compare18_Fvalue_uncertainty.png
R/Retrospective/Retrospective/plots_3/compare1_spawnbio.png
R/Retrospective/Retrospective/plots_3/compare2_spawnbio_uncertainty.png
R/Retrospective/Retrospective/plots_3/compare3_Bratio.png
R/Retrospective/Retrospective/plots_3/compare4_Bratio_uncertainty.png
R/Retrospective/Retrospective/plots_3/compare5_SPRratio.png
R/Retrospective/Retrospective/plots_3/compare6_SPRratio_uncertainty.png
R/Retrospective/Retrospective/plots_3/compare7_recruits.png
R/Retrospective/Retrospective/plots_3/compare8_recruits_uncertainty.png
R/Retrospective/Retrospective/plots_3/compare9_recdevs.png
R/Retrospective/Retrospective/retrospectives/retro-1/CONTROL.SS
R/Retrospective/Retrospective/retrospectives/retro-1/CompReport.sso
R/Retrospective/Retrospective/retrospectives/retro-1/CumReport.sso
R/Retrospective/Retrospective/retrospectives/retro-1/DATA.SS
R/Retrospective/Retrospective/retrospectives/retro-1/Forecast-report.sso
R/Retrospective/Retrospective/retrospectives/retro-1/ParmTrace.sso
R/Retrospective/Retrospective/retrospectives/retro-1/Report.sso
R/Retrospective/Retrospective/retrospectives/retro-1/SIS_table.sso
R/Retrospective/Retrospective/retrospectives/retro-1/SS.exe
R/Retrospective/Retrospective/retrospectives/retro-1/SS.log
R/Retrospective/Retrospective/retrospectives/retro-1/admodel.cov
R/Retrospective/Retrospective/retrospectives/retro-1/admodel.dep
R/Retrospective/Retrospective/retrospectives/retro-1/admodel.hes
R/Retrospective/Retrospective/retrospectives/retro-1/checkup.sso
R/Retrospective/Retrospective/retrospectives/retro-1/control.ss_new
R/Retrospective/Retrospective/retrospectives/retro-1/covar.sso
R/Retrospective/Retrospective/retrospectives/retro-1/data.ss_new
R/Retrospective/Retrospective/retrospectives/retro-1/derived_posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-1/echoinput.sso
R/Retrospective/Retrospective/retrospectives/retro-1/fmin.log
R/Retrospective/Retrospective/retrospectives/retro-1/forecast.ss
R/Retrospective/Retrospective/retrospectives/retro-1/forecast.ss_new
R/Retrospective/Retrospective/retrospectives/retro-1/gradient.1
R/Retrospective/Retrospective/retrospectives/retro-1/gradient.2
R/Retrospective/Retrospective/retrospectives/retro-1/gradient.3
R/Retrospective/Retrospective/retrospectives/retro-1/gradient.4
R/Retrospective/Retrospective/retrospectives/retro-1/gradient.5
R/Retrospective/Retrospective/retrospectives/retro-1/gradient.dat
R/Retrospective/Retrospective/retrospectives/retro-1/posterior_obj_func.sso
R/Retrospective/Retrospective/retrospectives/retro-1/posterior_vectors.sso
R/Retrospective/Retrospective/retrospectives/retro-1/posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-1/rebuild.sso
R/Retrospective/Retrospective/retrospectives/retro-1/runnumber.ss
R/Retrospective/Retrospective/retrospectives/retro-1/ss.b01
R/Retrospective/Retrospective/retrospectives/retro-1/ss.b02
R/Retrospective/Retrospective/retrospectives/retro-1/ss.b03
R/Retrospective/Retrospective/retrospectives/retro-1/ss.b04
R/Retrospective/Retrospective/retrospectives/retro-1/ss.b05
R/Retrospective/Retrospective/retrospectives/retro-1/ss.bar
R/Retrospective/Retrospective/retrospectives/retro-1/ss.cor
R/Retrospective/Retrospective/retrospectives/retro-1/ss.eva
R/Retrospective/Retrospective/retrospectives/retro-1/ss.p01
R/Retrospective/Retrospective/retrospectives/retro-1/ss.p02
R/Retrospective/Retrospective/retrospectives/retro-1/ss.p03
R/Retrospective/Retrospective/retrospectives/retro-1/ss.p04
R/Retrospective/Retrospective/retrospectives/retro-1/ss.p05
R/Retrospective/Retrospective/retrospectives/retro-1/ss.par
R/Retrospective/Retrospective/retrospectives/retro-1/ss.r01
R/Retrospective/Retrospective/retrospectives/retro-1/ss.r02
R/Retrospective/Retrospective/retrospectives/retro-1/ss.r03
R/Retrospective/Retrospective/retrospectives/retro-1/ss.r04
R/Retrospective/Retrospective/retrospectives/retro-1/ss.r05
R/Retrospective/Retrospective/retrospectives/retro-1/ss.rep
R/Retrospective/Retrospective/retrospectives/retro-1/ss.std
R/Retrospective/Retrospective/retrospectives/retro-1/ss_summary.sso
R/Retrospective/Retrospective/retrospectives/retro-1/starter.ss
R/Retrospective/Retrospective/retrospectives/retro-1/starter.ss_new
R/Retrospective/Retrospective/retrospectives/retro-1/warning.sso
R/Retrospective/Retrospective/retrospectives/retro-1/wtatage.ss_new
R/Retrospective/Retrospective/retrospectives/retro-2/CONTROL.SS
R/Retrospective/Retrospective/retrospectives/retro-2/CompReport.sso
R/Retrospective/Retrospective/retrospectives/retro-2/CumReport.sso
R/Retrospective/Retrospective/retrospectives/retro-2/DATA.SS
R/Retrospective/Retrospective/retrospectives/retro-2/Forecast-report.sso
R/Retrospective/Retrospective/retrospectives/retro-2/ParmTrace.sso
R/Retrospective/Retrospective/retrospectives/retro-2/Report.sso
R/Retrospective/Retrospective/retrospectives/retro-2/SIS_table.sso
R/Retrospective/Retrospective/retrospectives/retro-2/SS.exe
R/Retrospective/Retrospective/retrospectives/retro-2/SS.log
R/Retrospective/Retrospective/retrospectives/retro-2/admodel.cov
R/Retrospective/Retrospective/retrospectives/retro-2/admodel.dep
R/Retrospective/Retrospective/retrospectives/retro-2/admodel.hes
R/Retrospective/Retrospective/retrospectives/retro-2/checkup.sso
R/Retrospective/Retrospective/retrospectives/retro-2/control.ss_new
R/Retrospective/Retrospective/retrospectives/retro-2/covar.sso
R/Retrospective/Retrospective/retrospectives/retro-2/data.ss_new
R/Retrospective/Retrospective/retrospectives/retro-2/derived_posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-2/echoinput.sso
R/Retrospective/Retrospective/retrospectives/retro-2/fmin.log
R/Retrospective/Retrospective/retrospectives/retro-2/forecast.ss
R/Retrospective/Retrospective/retrospectives/retro-2/forecast.ss_new
R/Retrospective/Retrospective/retrospectives/retro-2/gradient.1
R/Retrospective/Retrospective/retrospectives/retro-2/gradient.2
R/Retrospective/Retrospective/retrospectives/retro-2/gradient.3
R/Retrospective/Retrospective/retrospectives/retro-2/gradient.4
R/Retrospective/Retrospective/retrospectives/retro-2/gradient.5
R/Retrospective/Retrospective/retrospectives/retro-2/gradient.dat
R/Retrospective/Retrospective/retrospectives/retro-2/posterior_obj_func.sso
R/Retrospective/Retrospective/retrospectives/retro-2/posterior_vectors.sso
R/Retrospective/Retrospective/retrospectives/retro-2/posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-2/rebuild.sso
R/Retrospective/Retrospective/retrospectives/retro-2/runnumber.ss
R/Retrospective/Retrospective/retrospectives/retro-2/ss.b01
R/Retrospective/Retrospective/retrospectives/retro-2/ss.b02
R/Retrospective/Retrospective/retrospectives/retro-2/ss.b03
R/Retrospective/Retrospective/retrospectives/retro-2/ss.b04
R/Retrospective/Retrospective/retrospectives/retro-2/ss.b05
R/Retrospective/Retrospective/retrospectives/retro-2/ss.bar
R/Retrospective/Retrospective/retrospectives/retro-2/ss.cor
R/Retrospective/Retrospective/retrospectives/retro-2/ss.eva
R/Retrospective/Retrospective/retrospectives/retro-2/ss.p01
R/Retrospective/Retrospective/retrospectives/retro-2/ss.p02
R/Retrospective/Retrospective/retrospectives/retro-2/ss.p03
R/Retrospective/Retrospective/retrospectives/retro-2/ss.p04
R/Retrospective/Retrospective/retrospectives/retro-2/ss.p05
R/Retrospective/Retrospective/retrospectives/retro-2/ss.par
R/Retrospective/Retrospective/retrospectives/retro-2/ss.r01
R/Retrospective/Retrospective/retrospectives/retro-2/ss.r02
R/Retrospective/Retrospective/retrospectives/retro-2/ss.r03
R/Retrospective/Retrospective/retrospectives/retro-2/ss.r04
R/Retrospective/Retrospective/retrospectives/retro-2/ss.r05
R/Retrospective/Retrospective/retrospectives/retro-2/ss.rep
R/Retrospective/Retrospective/retrospectives/retro-2/ss.std
R/Retrospective/Retrospective/retrospectives/retro-2/ss_summary.sso
R/Retrospective/Retrospective/retrospectives/retro-2/starter.ss
R/Retrospective/Retrospective/retrospectives/retro-2/starter.ss_new
R/Retrospective/Retrospective/retrospectives/retro-2/warning.sso
R/Retrospective/Retrospective/retrospectives/retro-2/wtatage.ss_new
R/Retrospective/Retrospective/retrospectives/retro-3/CONTROL.SS
R/Retrospective/Retrospective/retrospectives/retro-3/CompReport.sso
R/Retrospective/Retrospective/retrospectives/retro-3/CumReport.sso
R/Retrospective/Retrospective/retrospectives/retro-3/DATA.SS
R/Retrospective/Retrospective/retrospectives/retro-3/Forecast-report.sso
R/Retrospective/Retrospective/retrospectives/retro-3/ParmTrace.sso
R/Retrospective/Retrospective/retrospectives/retro-3/Report.sso
R/Retrospective/Retrospective/retrospectives/retro-3/SIS_table.sso
R/Retrospective/Retrospective/retrospectives/retro-3/SS.exe
R/Retrospective/Retrospective/retrospectives/retro-3/SS.log
R/Retrospective/Retrospective/retrospectives/retro-3/admodel.cov
R/Retrospective/Retrospective/retrospectives/retro-3/admodel.dep
R/Retrospective/Retrospective/retrospectives/retro-3/admodel.hes
R/Retrospective/Retrospective/retrospectives/retro-3/checkup.sso
R/Retrospective/Retrospective/retrospectives/retro-3/control.ss_new
R/Retrospective/Retrospective/retrospectives/retro-3/covar.sso
R/Retrospective/Retrospective/retrospectives/retro-3/data.ss_new
R/Retrospective/Retrospective/retrospectives/retro-3/derived_posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-3/echoinput.sso
R/Retrospective/Retrospective/retrospectives/retro-3/fmin.log
R/Retrospective/Retrospective/retrospectives/retro-3/forecast.ss
R/Retrospective/Retrospective/retrospectives/retro-3/forecast.ss_new
R/Retrospective/Retrospective/retrospectives/retro-3/gradient.1
R/Retrospective/Retrospective/retrospectives/retro-3/gradient.2
R/Retrospective/Retrospective/retrospectives/retro-3/gradient.3
R/Retrospective/Retrospective/retrospectives/retro-3/gradient.4
R/Retrospective/Retrospective/retrospectives/retro-3/gradient.5
R/Retrospective/Retrospective/retrospectives/retro-3/gradient.dat
R/Retrospective/Retrospective/retrospectives/retro-3/posterior_obj_func.sso
R/Retrospective/Retrospective/retrospectives/retro-3/posterior_vectors.sso
R/Retrospective/Retrospective/retrospectives/retro-3/posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-3/rebuild.sso
R/Retrospective/Retrospective/retrospectives/retro-3/runnumber.ss
R/Retrospective/Retrospective/retrospectives/retro-3/ss.b01
R/Retrospective/Retrospective/retrospectives/retro-3/ss.b02
R/Retrospective/Retrospective/retrospectives/retro-3/ss.b03
R/Retrospective/Retrospective/retrospectives/retro-3/ss.b04
R/Retrospective/Retrospective/retrospectives/retro-3/ss.b05
R/Retrospective/Retrospective/retrospectives/retro-3/ss.bar
R/Retrospective/Retrospective/retrospectives/retro-3/ss.cor
R/Retrospective/Retrospective/retrospectives/retro-3/ss.eva
R/Retrospective/Retrospective/retrospectives/retro-3/ss.p01
R/Retrospective/Retrospective/retrospectives/retro-3/ss.p02
R/Retrospective/Retrospective/retrospectives/retro-3/ss.p03
R/Retrospective/Retrospective/retrospectives/retro-3/ss.p04
R/Retrospective/Retrospective/retrospectives/retro-3/ss.p05
R/Retrospective/Retrospective/retrospectives/retro-3/ss.par
R/Retrospective/Retrospective/retrospectives/retro-3/ss.r01
R/Retrospective/Retrospective/retrospectives/retro-3/ss.r02
R/Retrospective/Retrospective/retrospectives/retro-3/ss.r03
R/Retrospective/Retrospective/retrospectives/retro-3/ss.r04
R/Retrospective/Retrospective/retrospectives/retro-3/ss.r05
R/Retrospective/Retrospective/retrospectives/retro-3/ss.rep
R/Retrospective/Retrospective/retrospectives/retro-3/ss.std
R/Retrospective/Retrospective/retrospectives/retro-3/ss_summary.sso
R/Retrospective/Retrospective/retrospectives/retro-3/starter.ss
R/Retrospective/Retrospective/retrospectives/retro-3/starter.ss_new
R/Retrospective/Retrospective/retrospectives/retro-3/warning.sso
R/Retrospective/Retrospective/retrospectives/retro-3/wtatage.ss_new
R/Retrospective/Retrospective/retrospectives/retro-4/CONTROL.SS
R/Retrospective/Retrospective/retrospectives/retro-4/CompReport.sso
R/Retrospective/Retrospective/retrospectives/retro-4/CumReport.sso
R/Retrospective/Retrospective/retrospectives/retro-4/DATA.SS
R/Retrospective/Retrospective/retrospectives/retro-4/Forecast-report.sso
R/Retrospective/Retrospective/retrospectives/retro-4/ParmTrace.sso
R/Retrospective/Retrospective/retrospectives/retro-4/Report.sso
R/Retrospective/Retrospective/retrospectives/retro-4/SIS_table.sso
R/Retrospective/Retrospective/retrospectives/retro-4/SS.exe
R/Retrospective/Retrospective/retrospectives/retro-4/SS.log
R/Retrospective/Retrospective/retrospectives/retro-4/admodel.cov
R/Retrospective/Retrospective/retrospectives/retro-4/admodel.dep
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R/Retrospective/Retrospective/retrospectives/retro-4/checkup.sso
R/Retrospective/Retrospective/retrospectives/retro-4/cmpdiff.tmp
R/Retrospective/Retrospective/retrospectives/retro-4/control.ss_new
R/Retrospective/Retrospective/retrospectives/retro-4/data.ss_new
R/Retrospective/Retrospective/retrospectives/retro-4/derived_posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-4/echoinput.sso
R/Retrospective/Retrospective/retrospectives/retro-4/fmin.log
R/Retrospective/Retrospective/retrospectives/retro-4/forecast.ss
R/Retrospective/Retrospective/retrospectives/retro-4/forecast.ss_new
R/Retrospective/Retrospective/retrospectives/retro-4/gradfil1.tmp
R/Retrospective/Retrospective/retrospectives/retro-4/gradfil2.tmp
R/Retrospective/Retrospective/retrospectives/retro-4/gradient.1
R/Retrospective/Retrospective/retrospectives/retro-4/gradient.2
R/Retrospective/Retrospective/retrospectives/retro-4/gradient.3
R/Retrospective/Retrospective/retrospectives/retro-4/gradient.4
R/Retrospective/Retrospective/retrospectives/retro-4/gradient.5
R/Retrospective/Retrospective/retrospectives/retro-4/gradient.dat
R/Retrospective/Retrospective/retrospectives/retro-4/posterior_obj_func.sso
R/Retrospective/Retrospective/retrospectives/retro-4/posterior_vectors.sso
R/Retrospective/Retrospective/retrospectives/retro-4/posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-4/rebuild.sso
R/Retrospective/Retrospective/retrospectives/retro-4/runnumber.ss
R/Retrospective/Retrospective/retrospectives/retro-4/ss.b01
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R/Retrospective/Retrospective/retrospectives/retro-4/ss.rep
R/Retrospective/Retrospective/retrospectives/retro-4/ss.std
R/Retrospective/Retrospective/retrospectives/retro-4/ss_summary.sso
R/Retrospective/Retrospective/retrospectives/retro-4/starter.ss
R/Retrospective/Retrospective/retrospectives/retro-4/starter.ss_new
R/Retrospective/Retrospective/retrospectives/retro-4/varssave.tmp
R/Retrospective/Retrospective/retrospectives/retro-4/warning.sso
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R/Retrospective/Retrospective/retrospectives/retro-5/CONTROL.SS
R/Retrospective/Retrospective/retrospectives/retro-5/CompReport.sso
R/Retrospective/Retrospective/retrospectives/retro-5/CumReport.sso
R/Retrospective/Retrospective/retrospectives/retro-5/DATA.SS
R/Retrospective/Retrospective/retrospectives/retro-5/Forecast-report.sso
R/Retrospective/Retrospective/retrospectives/retro-5/ParmTrace.sso
R/Retrospective/Retrospective/retrospectives/retro-5/Report.sso
R/Retrospective/Retrospective/retrospectives/retro-5/SIS_table.sso
R/Retrospective/Retrospective/retrospectives/retro-5/SS.exe
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R/Retrospective/Retrospective/retrospectives/retro-5/data.ss_new
R/Retrospective/Retrospective/retrospectives/retro-5/derived_posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-5/echoinput.sso
R/Retrospective/Retrospective/retrospectives/retro-5/fmin.log
R/Retrospective/Retrospective/retrospectives/retro-5/forecast.ss
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R/Retrospective/Retrospective/retrospectives/retro-5/gradient.1
R/Retrospective/Retrospective/retrospectives/retro-5/gradient.2
R/Retrospective/Retrospective/retrospectives/retro-5/gradient.3
R/Retrospective/Retrospective/retrospectives/retro-5/gradient.4
R/Retrospective/Retrospective/retrospectives/retro-5/gradient.5
R/Retrospective/Retrospective/retrospectives/retro-5/gradient.dat
R/Retrospective/Retrospective/retrospectives/retro-5/posterior_obj_func.sso
R/Retrospective/Retrospective/retrospectives/retro-5/posterior_vectors.sso
R/Retrospective/Retrospective/retrospectives/retro-5/posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro-5/rebuild.sso
R/Retrospective/Retrospective/retrospectives/retro-5/runnumber.ss
R/Retrospective/Retrospective/retrospectives/retro-5/ss.b01
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R/Retrospective/Retrospective/retrospectives/retro-5/ss.std
R/Retrospective/Retrospective/retrospectives/retro-5/ss_summary.sso
R/Retrospective/Retrospective/retrospectives/retro-5/starter.ss
R/Retrospective/Retrospective/retrospectives/retro-5/starter.ss_new
R/Retrospective/Retrospective/retrospectives/retro-5/warning.sso
R/Retrospective/Retrospective/retrospectives/retro-5/wtatage.ss_new
R/Retrospective/Retrospective/retrospectives/retro0/CONTROL.SS
R/Retrospective/Retrospective/retrospectives/retro0/CompReport.sso
R/Retrospective/Retrospective/retrospectives/retro0/CumReport.sso
R/Retrospective/Retrospective/retrospectives/retro0/DATA.SS
R/Retrospective/Retrospective/retrospectives/retro0/Forecast-report.sso
R/Retrospective/Retrospective/retrospectives/retro0/ParmTrace.sso
R/Retrospective/Retrospective/retrospectives/retro0/Report.sso
R/Retrospective/Retrospective/retrospectives/retro0/SIS_table.sso
R/Retrospective/Retrospective/retrospectives/retro0/SS.exe
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R/Retrospective/Retrospective/retrospectives/retro0/checkup.sso
R/Retrospective/Retrospective/retrospectives/retro0/control.ss_new
R/Retrospective/Retrospective/retrospectives/retro0/covar.sso
R/Retrospective/Retrospective/retrospectives/retro0/data.ss_new
R/Retrospective/Retrospective/retrospectives/retro0/derived_posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro0/echoinput.sso
R/Retrospective/Retrospective/retrospectives/retro0/fmin.log
R/Retrospective/Retrospective/retrospectives/retro0/forecast.ss
R/Retrospective/Retrospective/retrospectives/retro0/forecast.ss_new
R/Retrospective/Retrospective/retrospectives/retro0/gradient.1
R/Retrospective/Retrospective/retrospectives/retro0/gradient.2
R/Retrospective/Retrospective/retrospectives/retro0/gradient.3
R/Retrospective/Retrospective/retrospectives/retro0/gradient.4
R/Retrospective/Retrospective/retrospectives/retro0/gradient.5
R/Retrospective/Retrospective/retrospectives/retro0/gradient.dat
R/Retrospective/Retrospective/retrospectives/retro0/posterior_obj_func.sso
R/Retrospective/Retrospective/retrospectives/retro0/posterior_vectors.sso
R/Retrospective/Retrospective/retrospectives/retro0/posteriors.sso
R/Retrospective/Retrospective/retrospectives/retro0/rebuild.sso
R/Retrospective/Retrospective/retrospectives/retro0/runnumber.ss
R/Retrospective/Retrospective/retrospectives/retro0/ss.b01
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R/Retrospective/Retrospective/retrospectives/retro0/ss.cor
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R/Retrospective/Retrospective/retrospectives/retro0/ss.std
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R/Retrospective/Retrospective/retrospectives/retro0/starter.ss_new
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R/Retrospective/Retrospective/retrospectives/retro0/wtatage.ss_new
R/Retrospective/Retrospective/starter.ss
R/Retrospective/rho/03_Mohns_rho.r R/SS_diags.R
R/Uku.zip
R/Uku/00_Merged_Retro_analysis_examples.R R/Uku/01_Merged_Retro_analysis_examples.R
R/Uku/Retrospective/Uku.ctl
R/Uku/Retrospective/Uku.dat
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R/Uku/Retrospective/plots_1/00_SSmohnsrho.txt
R/Uku/Retrospective/plots_1/Retrospective_dev_plots.pdf
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R/Uku/Retrospective/plots_1/Retrospective_dev_plots_unscaled.png
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R/Uku/Retrospective/plots_1/retro 20191029_1124.RData
R/Uku/Retrospective/retrospectives/retro-1/CompReport.sso
R/Uku/Retrospective/retrospectives/retro-1/CumReport.sso
R/Uku/Retrospective/retrospectives/retro-1/Forecast-report.sso
R/Uku/Retrospective/retrospectives/retro-1/ParmTrace.sso
R/Uku/Retrospective/retrospectives/retro-1/Report.sso
R/Uku/Retrospective/retrospectives/retro-1/SIS_table.sso
R/Uku/Retrospective/retrospectives/retro-1/Uku.ctl
R/Uku/Retrospective/retrospectives/retro-1/Uku.dat
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R/Uku/Retrospective/retrospectives/retro-1/control.ss_new
R/Uku/Retrospective/retrospectives/retro-1/covar.sso
R/Uku/Retrospective/retrospectives/retro-1/data.ss_new
R/Uku/Retrospective/retrospectives/retro-1/derived_posteriors.sso
R/Uku/Retrospective/retrospectives/retro-1/echoinput.sso
R/Uku/Retrospective/retrospectives/retro-1/fmin.log
R/Uku/Retrospective/retrospectives/retro-1/forecast.ss
R/Uku/Retrospective/retrospectives/retro-1/forecast.ss_new
R/Uku/Retrospective/retrospectives/retro-1/gradient.1
R/Uku/Retrospective/retrospectives/retro-1/gradient.2
R/Uku/Retrospective/retrospectives/retro-1/gradient.3
R/Uku/Retrospective/retrospectives/retro-1/gradient.dat
R/Uku/Retrospective/retrospectives/retro-1/posterior_obj_func.sso
R/Uku/Retrospective/retrospectives/retro-1/posterior_vectors.sso
R/Uku/Retrospective/retrospectives/retro-1/posteriors.sso
R/Uku/Retrospective/retrospectives/retro-1/rebuild.sso
R/Uku/Retrospective/retrospectives/retro-1/runnumber.ss
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R/Uku/Retrospective/retrospectives/retro-1/ss.std
R/Uku/Retrospective/retrospectives/retro-1/ss_summary.sso
R/Uku/Retrospective/retrospectives/retro-1/starter.ss
R/Uku/Retrospective/retrospectives/retro-1/starter.ss_new
R/Uku/Retrospective/retrospectives/retro-1/warning.sso
R/Uku/Retrospective/retrospectives/retro-1/wtatage.ss_new
R/Uku/Retrospective/retrospectives/retro-2/CompReport.sso
R/Uku/Retrospective/retrospectives/retro-2/CumReport.sso
R/Uku/Retrospective/retrospectives/retro-2/Forecast-report.sso
R/Uku/Retrospective/retrospectives/retro-2/ParmTrace.sso
R/Uku/Retrospective/retrospectives/retro-2/Report.sso
R/Uku/Retrospective/retrospectives/retro-2/SIS_table.sso
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R/Uku/Retrospective/retrospectives/retro-2/covar.sso
R/Uku/Retrospective/retrospectives/retro-2/data.ss_new
R/Uku/Retrospective/retrospectives/retro-2/derived_posteriors.sso
R/Uku/Retrospective/retrospectives/retro-2/echoinput.sso
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R/Uku/Retrospective/retrospectives/retro-2/gradient.dat
R/Uku/Retrospective/retrospectives/retro-2/posterior_obj_func.sso
R/Uku/Retrospective/retrospectives/retro-2/posterior_vectors.sso
R/Uku/Retrospective/retrospectives/retro-2/posteriors.sso
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R/Uku/Retrospective/retrospectives/retro-2/ss_summary.sso
R/Uku/Retrospective/retrospectives/retro-2/starter.ss
R/Uku/Retrospective/retrospectives/retro-2/starter.ss_new
R/Uku/Retrospective/retrospectives/retro-2/warning.sso
R/Uku/Retrospective/retrospectives/retro-2/wtatage.ss_new
R/Uku/Retrospective/retrospectives/retro-3/CompReport.sso
R/Uku/Retrospective/retrospectives/retro-3/CumReport.sso
R/Uku/Retrospective/retrospectives/retro-3/Forecast-report.sso
R/Uku/Retrospective/retrospectives/retro-3/ParmTrace.sso
R/Uku/Retrospective/retrospectives/retro-3/Report.sso
R/Uku/Retrospective/retrospectives/retro-3/SIS_table.sso
R/Uku/Retrospective/retrospectives/retro-3/Uku.ctl
R/Uku/Retrospective/retrospectives/retro-3/Uku.dat
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R/Uku/Retrospective/retrospectives/retro-3/control.ss_new
R/Uku/Retrospective/retrospectives/retro-3/covar.sso
R/Uku/Retrospective/retrospectives/retro-3/data.ss_new
R/Uku/Retrospective/retrospectives/retro-3/derived_posteriors.sso
R/Uku/Retrospective/retrospectives/retro-3/echoinput.sso
R/Uku/Retrospective/retrospectives/retro-3/fmin.log
R/Uku/Retrospective/retrospectives/retro-3/forecast.ss
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R/Uku/Retrospective/retrospectives/retro-3/gradient.1
R/Uku/Retrospective/retrospectives/retro-3/gradient.2
R/Uku/Retrospective/retrospectives/retro-3/gradient.3
R/Uku/Retrospective/retrospectives/retro-3/gradient.dat
R/Uku/Retrospective/retrospectives/retro-3/posterior_obj_func.sso
R/Uku/Retrospective/retrospectives/retro-3/posterior_vectors.sso
R/Uku/Retrospective/retrospectives/retro-3/posteriors.sso
R/Uku/Retrospective/retrospectives/retro-3/rebuild.sso
R/Uku/Retrospective/retrospectives/retro-3/runnumber.ss
R/Uku/Retrospective/retrospectives/retro-3/ss.b01
R/Uku/Retrospective/retrospectives/retro-3/ss.b02
R/Uku/Retrospective/retrospectives/retro-3/ss.b03
R/Uku/Retrospective/retrospectives/retro-3/ss.bar
R/Uku/Retrospective/retrospectives/retro-3/ss.cor
R/Uku/Retrospective/retrospectives/retro-3/ss.eva
R/Uku/Retrospective/retrospectives/retro-3/ss.exe
R/Uku/Retrospective/retrospectives/retro-3/ss.log
R/Uku/Retrospective/retrospectives/retro-3/ss.p01
R/Uku/Retrospective/retrospectives/retro-3/ss.p02
R/Uku/Retrospective/retrospectives/retro-3/ss.p03
R/Uku/Retrospective/retrospectives/retro-3/ss.par
R/Uku/Retrospective/retrospectives/retro-3/ss.r01
R/Uku/Retrospective/retrospectives/retro-3/ss.r02
R/Uku/Retrospective/retrospectives/retro-3/ss.r03
R/Uku/Retrospective/retrospectives/retro-3/ss.rep
R/Uku/Retrospective/retrospectives/retro-3/ss.std
R/Uku/Retrospective/retrospectives/retro-3/ss_summary.sso
R/Uku/Retrospective/retrospectives/retro-3/starter.ss
R/Uku/Retrospective/retrospectives/retro-3/starter.ss_new
R/Uku/Retrospective/retrospectives/retro-3/warning.sso
R/Uku/Retrospective/retrospectives/retro-3/wtatage.ss_new
R/Uku/Retrospective/retrospectives/retro-4/CompReport.sso
R/Uku/Retrospective/retrospectives/retro-4/CumReport.sso
R/Uku/Retrospective/retrospectives/retro-4/Forecast-report.sso
R/Uku/Retrospective/retrospectives/retro-4/ParmTrace.sso
R/Uku/Retrospective/retrospectives/retro-4/Report.sso
R/Uku/Retrospective/retrospectives/retro-4/SIS_table.sso
R/Uku/Retrospective/retrospectives/retro-4/Uku.ctl
R/Uku/Retrospective/retrospectives/retro-4/Uku.dat
R/Uku/Retrospective/retrospectives/retro-4/admodel.cov
R/Uku/Retrospective/retrospectives/retro-4/admodel.dep
R/Uku/Retrospective/retrospectives/retro-4/admodel.hes
R/Uku/Retrospective/retrospectives/retro-4/control.ss_new
R/Uku/Retrospective/retrospectives/retro-4/covar.sso
R/Uku/Retrospective/retrospectives/retro-4/data.ss_new
R/Uku/Retrospective/retrospectives/retro-4/derived_posteriors.sso
R/Uku/Retrospective/retrospectives/retro-4/echoinput.sso
R/Uku/Retrospective/retrospectives/retro-4/fmin.log
R/Uku/Retrospective/retrospectives/retro-4/forecast.ss
R/Uku/Retrospective/retrospectives/retro-4/forecast.ss_new
R/Uku/Retrospective/retrospectives/retro-4/gradient.1
R/Uku/Retrospective/retrospectives/retro-4/gradient.2
R/Uku/Retrospective/retrospectives/retro-4/gradient.3
R/Uku/Retrospective/retrospectives/retro-4/gradient.dat
R/Uku/Retrospective/retrospectives/retro-4/posterior_obj_func.sso
R/Uku/Retrospective/retrospectives/retro-4/posterior_vectors.sso
R/Uku/Retrospective/retrospectives/retro-4/posteriors.sso
R/Uku/Retrospective/retrospectives/retro-4/rebuild.sso
R/Uku/Retrospective/retrospectives/retro-4/runnumber.ss
R/Uku/Retrospective/retrospectives/retro-4/ss.b01
R/Uku/Retrospective/retrospectives/retro-4/ss.b02
R/Uku/Retrospective/retrospectives/retro-4/ss.b03
R/Uku/Retrospective/retrospectives/retro-4/ss.bar
R/Uku/Retrospective/retrospectives/retro-4/ss.cor
R/Uku/Retrospective/retrospectives/retro-4/ss.eva
R/Uku/Retrospective/retrospectives/retro-4/ss.exe
R/Uku/Retrospective/retrospectives/retro-4/ss.log
R/Uku/Retrospective/retrospectives/retro-4/ss.p01
R/Uku/Retrospective/retrospectives/retro-4/ss.p02
R/Uku/Retrospective/retrospectives/retro-4/ss.p03
R/Uku/Retrospective/retrospectives/retro-4/ss.par
R/Uku/Retrospective/retrospectives/retro-4/ss.r01
R/Uku/Retrospective/retrospectives/retro-4/ss.r02
R/Uku/Retrospective/retrospectives/retro-4/ss.r03
R/Uku/Retrospective/retrospectives/retro-4/ss.rep
R/Uku/Retrospective/retrospectives/retro-4/ss.std
R/Uku/Retrospective/retrospectives/retro-4/ss_summary.sso
R/Uku/Retrospective/retrospectives/retro-4/starter.ss
R/Uku/Retrospective/retrospectives/retro-4/starter.ss_new
R/Uku/Retrospective/retrospectives/retro-4/warning.sso
R/Uku/Retrospective/retrospectives/retro-4/wtatage.ss_new
R/Uku/Retrospective/retrospectives/retro-5/CompReport.sso
R/Uku/Retrospective/retrospectives/retro-5/CumReport.sso
R/Uku/Retrospective/retrospectives/retro-5/Forecast-report.sso
R/Uku/Retrospective/retrospectives/retro-5/ParmTrace.sso
R/Uku/Retrospective/retrospectives/retro-5/Report.sso
R/Uku/Retrospective/retrospectives/retro-5/SIS_table.sso
R/Uku/Retrospective/retrospectives/retro-5/Uku.ctl
R/Uku/Retrospective/retrospectives/retro-5/Uku.dat
R/Uku/Retrospective/retrospectives/retro-5/admodel.cov
R/Uku/Retrospective/retrospectives/retro-5/admodel.dep
R/Uku/Retrospective/retrospectives/retro-5/admodel.hes
R/Uku/Retrospective/retrospectives/retro-5/control.ss_new
R/Uku/Retrospective/retrospectives/retro-5/covar.sso
R/Uku/Retrospective/retrospectives/retro-5/data.ss_new
R/Uku/Retrospective/retrospectives/retro-5/derived_posteriors.sso
R/Uku/Retrospective/retrospectives/retro-5/echoinput.sso
R/Uku/Retrospective/retrospectives/retro-5/fmin.log
R/Uku/Retrospective/retrospectives/retro-5/forecast.ss
R/Uku/Retrospective/retrospectives/retro-5/forecast.ss_new
R/Uku/Retrospective/retrospectives/retro-5/gradient.1
R/Uku/Retrospective/retrospectives/retro-5/gradient.2
R/Uku/Retrospective/retrospectives/retro-5/gradient.3
R/Uku/Retrospective/retrospectives/retro-5/gradient.dat
R/Uku/Retrospective/retrospectives/retro-5/posterior_obj_func.sso
R/Uku/Retrospective/retrospectives/retro-5/posterior_vectors.sso
R/Uku/Retrospective/retrospectives/retro-5/posteriors.sso
R/Uku/Retrospective/retrospectives/retro-5/rebuild.sso
R/Uku/Retrospective/retrospectives/retro-5/runnumber.ss
R/Uku/Retrospective/retrospectives/retro-5/ss.b01
R/Uku/Retrospective/retrospectives/retro-5/ss.b02
R/Uku/Retrospective/retrospectives/retro-5/ss.b03
R/Uku/Retrospective/retrospectives/retro-5/ss.bar
R/Uku/Retrospective/retrospectives/retro-5/ss.cor
R/Uku/Retrospective/retrospectives/retro-5/ss.eva
R/Uku/Retrospective/retrospectives/retro-5/ss.exe
R/Uku/Retrospective/retrospectives/retro-5/ss.log
R/Uku/Retrospective/retrospectives/retro-5/ss.p01
R/Uku/Retrospective/retrospectives/retro-5/ss.p02
R/Uku/Retrospective/retrospectives/retro-5/ss.p03
R/Uku/Retrospective/retrospectives/retro-5/ss.par
R/Uku/Retrospective/retrospectives/retro-5/ss.r01
R/Uku/Retrospective/retrospectives/retro-5/ss.r02
R/Uku/Retrospective/retrospectives/retro-5/ss.r03
R/Uku/Retrospective/retrospectives/retro-5/ss.rep
R/Uku/Retrospective/retrospectives/retro-5/ss.std
R/Uku/Retrospective/retrospectives/retro-5/ss_summary.sso
R/Uku/Retrospective/retrospectives/retro-5/starter.ss
R/Uku/Retrospective/retrospectives/retro-5/starter.ss_new
R/Uku/Retrospective/retrospectives/retro-5/warning.sso
R/Uku/Retrospective/retrospectives/retro-5/wtatage.ss_new
R/Uku/Retrospective/retrospectives/retro0/CompReport.sso
R/Uku/Retrospective/retrospectives/retro0/CumReport.sso
R/Uku/Retrospective/retrospectives/retro0/Forecast-report.sso
R/Uku/Retrospective/retrospectives/retro0/ParmTrace.sso
R/Uku/Retrospective/retrospectives/retro0/Report.sso
R/Uku/Retrospective/retrospectives/retro0/SIS_table.sso
R/Uku/Retrospective/retrospectives/retro0/Uku.ctl
R/Uku/Retrospective/retrospectives/retro0/Uku.dat
R/Uku/Retrospective/retrospectives/retro0/admodel.cov
R/Uku/Retrospective/retrospectives/retro0/admodel.dep
R/Uku/Retrospective/retrospectives/retro0/admodel.hes
R/Uku/Retrospective/retrospectives/retro0/control.ss_new
R/Uku/Retrospective/retrospectives/retro0/covar.sso
R/Uku/Retrospective/retrospectives/retro0/data.ss_new
R/Uku/Retrospective/retrospectives/retro0/derived_posteriors.sso
R/Uku/Retrospective/retrospectives/retro0/echoinput.sso
R/Uku/Retrospective/retrospectives/retro0/fmin.log
R/Uku/Retrospective/retrospectives/retro0/forecast.ss
R/Uku/Retrospective/retrospectives/retro0/forecast.ss_new
R/Uku/Retrospective/retrospectives/retro0/gradient.1
R/Uku/Retrospective/retrospectives/retro0/gradient.2
R/Uku/Retrospective/retrospectives/retro0/gradient.3
R/Uku/Retrospective/retrospectives/retro0/gradient.dat
R/Uku/Retrospective/retrospectives/retro0/posterior_obj_func.sso
R/Uku/Retrospective/retrospectives/retro0/posterior_vectors.sso
R/Uku/Retrospective/retrospectives/retro0/posteriors.sso
R/Uku/Retrospective/retrospectives/retro0/rebuild.sso
R/Uku/Retrospective/retrospectives/retro0/runnumber.ss
R/Uku/Retrospective/retrospectives/retro0/ss.b01
R/Uku/Retrospective/retrospectives/retro0/ss.b02
R/Uku/Retrospective/retrospectives/retro0/ss.b03
R/Uku/Retrospective/retrospectives/retro0/ss.bar
R/Uku/Retrospective/retrospectives/retro0/ss.cor
R/Uku/Retrospective/retrospectives/retro0/ss.eva
R/Uku/Retrospective/retrospectives/retro0/ss.exe
R/Uku/Retrospective/retrospectives/retro0/ss.log
R/Uku/Retrospective/retrospectives/retro0/ss.p01
R/Uku/Retrospective/retrospectives/retro0/ss.p02
R/Uku/Retrospective/retrospectives/retro0/ss.p03
R/Uku/Retrospective/retrospectives/retro0/ss.par
R/Uku/Retrospective/retrospectives/retro0/ss.r01
R/Uku/Retrospective/retrospectives/retro0/ss.r02
R/Uku/Retrospective/retrospectives/retro0/ss.r03
R/Uku/Retrospective/retrospectives/retro0/ss.rep
R/Uku/Retrospective/retrospectives/retro0/ss.std
R/Uku/Retrospective/retrospectives/retro0/ss_summary.sso
R/Uku/Retrospective/retrospectives/retro0/starter.ss
R/Uku/Retrospective/retrospectives/retro0/starter.ss_new
R/Uku/Retrospective/retrospectives/retro0/warning.sso
R/Uku/Retrospective/retrospectives/retro0/wtatage.ss_new
R/Uku/Retrospective/ss.exe
R/Uku/Retrospective/starter.ss
R/Uku/retro/Uku.ctl
R/Uku/retro/Uku.dat
R/Uku/retro/forecast.ss
R/Uku/retro/ss.exe
R/Uku/retro/starter.ss
R/Uku/ss3residualsdiag.R R/Uku/ss3runsFun.R R/deprecated/SS3_Diagnostics.R R/deprecated/getML.R R/deprecated/hello.R R/deprecated/readss.sma.Diagnostics_v2-RAW.R R/deprecated/readss.sma.Diagnostics_v2.R R/getTA1.R R/plot_r0_profile (2).r R/plot_r0_profile_fromcsv.R R/produceRuns.R R/r0_profile.R
R/r0profile_20190328_0858.csv
R/runsRecDev.R R/runsSig3.R R/runsSizeComp.R R/working_paper_plots.R README.md man/hello.Rd
ssdiags.Rproj
mkapur/ssdiags documentation built on April 8, 2020, 7:17 p.m.

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