Man pages for mlfelice/plfaR
Interface for Analyzing IonVantage 13C-PLFA Data
| area_to_concentration | Convert peak areas to concentration (nmol/g dry soil) |
| calc_biomarkers_tidy | Calculate mol fractions of biomarkers and microbial groups |
| calc_concentration_tidy | Convert peak areas to concentration |
| calculate_indicators | Calculate concentration and relative abundance of indicator... |
| correct_iso | Process del13C values |
| correct_iso_base | Process del13C values |
| correct_iso_base2 | Process del13C values |
| count_lipids | Calculate distribution of lipids |
| count_lipids_tidy | Calculate distribution of lipids |
| find_duplicates | Identify duplicate peak names within samples |
| find_missing | 'find_missing' Identifies samples that are missing lipids... |
| hello | Hello, World! |
| import_batch | Import single batch PLFA peak list from Excel |
| import_batch_multi | Import multiple PLFA peak lists (Excel files) in a directory |
| import_batch_tidy | Import single batch PLFA peak list from Excel |
| indic_iso_base | Calculate d13C for indicator groups |
| lipid_reference | Molecular weights of microbially-derived phospholipids |
| normalize_area_tidy | Normalize peak areas across batches |
| process_peak_area | Convert peak areas to concentration (nmol/g dry soil) |
| quality_check | Inspect PLFA peak list quality. |
| quality_check_tidy | Inspect PLFA peak list quality. |
| subtract_blanks | Subtract peak area from control and standard lipids |
| subtract_blanks_tidy | Subtract surrogate and methylation standard peak areas |
