Man pages for momeara/BioChemPantry
Load bioinformatics datasets into a local database
| create_schema | Create a schema in the pantry |
| date_code | create date code of the form YYMMDD inputs: d (optional):... |
| drop_schema | Drop a schema from the pantry |
| drop_table | Drop a table |
| get_pantry | Attach to the pantry database, optionally using a schema. If... |
| get_pantry_config | Get and check login information for Postgres database |
| get_schema | Alias for get_search_path |
| get_schemas | Get all available schemas |
| get_search_path | Get the search path for looking for namespaces |
| get_staging_directory | Get the staging directory for the given dataset |
| get_tables | Get all tables in the active schema or search path |
| make_symmetric | make a dataset symmetric |
| schema_tbl | Identify a table qualified by a schema. This works around... |
| set_schema | Set a schema as the active schema |
| summarize_map | Diagnostics for messy joins |
| test_distinct | test distinct rows e.g. for testing for network loops |
| test_is_symmetric | test if the columns names(ids) are symmetric to the columns... |
| test_null_count | test number null |
| test_null_frac | test fraction null |
| uniprot_entry_web_lookup | Get lookup info for given uniprot entries one at a time |
| uniprot_taxa | Get all taxa below a given ancestor taxa |
| uniprot_web_lookup | Get lookup info for given uniprot accessions one at a time |
