Files in mrc-ide/COVIDCurve
Inferring the Infection Fatality Ratio from COVID-19 Aggregated Death and Seroprevalence Data
.Rbuildignore
.covrignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
COVIDCurve.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/Agecpp2strings.R
R/RcppExports.R
R/assertions_v5.R
R/data.R
R/main.R
R/model.R
R/simulators.R
R/summarize_plot.R
R/zzz.R
README.md
R_ignore/deploy/test_deploy_withOUT_serorev.R
R_ignore/deploy/test_deploy_with_serorev.R
R_ignore/images/Fig_concept_diagram.png
R_ignore/prior_table_generator.R
_pkgdown.yml
codecov.yml
data/covidcurve_modfit.rda
data/covidcurve_simdata.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/index.html
docs/articles/installation.html
docs/articles/installation_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/installation_files/header-attrs-2.1/header-attrs.js
docs/articles/runningmodel.html
docs/articles/runningmodel_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/runningmodel_files/figure-html/unnamed-chunk-4-1.png
docs/articles/runningmodel_files/figure-html/unnamed-chunk-5-1.png
docs/articles/runningmodel_files/figure-html/unnamed-chunk-6-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Agesim_infxn_2_death.html
docs/reference/COVIDCurve.html
docs/reference/draw_posterior_infxn_cubic_splines.html
docs/reference/draw_posterior_sero_curves.html
docs/reference/get_cred_intervals.html
docs/reference/get_gelman_rubin_diagnostic.html
docs/reference/get_overall_IFR_cred_intervals.html
docs/reference/index.html
docs/reference/make_IFRmodel_age.html
docs/reference/posterior_check_infxns_to_death.html
docs/reference/run_IFRmodel_age.html
docs/reference/sim_infxn_2_death.html
inst/covidcurve/natcubicspline_loglike_binomial.cpp
inst/covidcurve/natcubicspline_loglike_logit.cpp
man/Agesim_infxn_2_death.Rd
man/COVIDCurve.Rd
man/draw_posterior_infxn_cubic_splines.Rd
man/draw_posterior_sero_curves.Rd
man/get_cred_intervals.Rd
man/get_gelman_rubin_diagnostic.Rd
man/get_overall_IFR_cred_intervals.Rd
man/make_IFRmodel_age.Rd
man/posterior_check_infxns_to_death.Rd
man/run_IFRmodel_age.Rd
src/.gitignore
src/RcppExports.cpp
src/natcubicspline_loglike_binomial.cpp
src/natcubicspline_loglike_logit.cpp
tests/testthat.R
tests/testthat/test-check_natcub_cpp.R
tests/testthat/test-check_string2cpp.R
tests/testthat/test-prior_string.R
tests/testthat/test-run_mod.R
vignettes/.gitignore
vignettes/installation.Rmd
vignettes/runningmodel.Rmd
