.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/RMAPI.R
R/RcppExports.R
R/assertions_v5.R
R/create_map2.R
R/data.R
R/main.R
R/misc.R
R/plot.R
R/rmapi_project.R
R/rmapi_sim.R
R/simulation.R
README.md
_pkgdown.yml
appveyor.yml
docs/404.html
docs/articles/basic-tutorial.html
docs/articles/basic-tutorial_files/Proj4Leaflet-1.0.1/proj4-compressed.js
docs/articles/basic-tutorial_files/Proj4Leaflet-1.0.1/proj4leaflet.js
docs/articles/basic-tutorial_files/figure-html/unnamed-chunk-10-1.png
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docs/articles/basic-tutorial_files/htmlwidgets-1.3/htmlwidgets.js
docs/articles/basic-tutorial_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/basic-tutorial_files/jquery-1.12.4/jquery.min.js
docs/articles/basic-tutorial_files/leaflet-1.3.1/images/layers-2x.png
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docs/articles/basic-tutorial_files/leaflet-1.3.1/images/marker-icon.png
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docs/articles/basic-tutorial_files/leaflet-1.3.1/leaflet.css
docs/articles/basic-tutorial_files/leaflet-1.3.1/leaflet.js
docs/articles/basic-tutorial_files/leaflet-binding-2.0.2/leaflet.js
docs/articles/basic-tutorial_files/leaflet-binding-2.0.3/leaflet.js
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docs/articles/basic-tutorial_files/leaflet-providers-1.1.17/rstudio_install.md
docs/articles/basic-tutorial_files/leaflet-providers-1.9.0/leaflet-providers_1.9.0.js
docs/articles/basic-tutorial_files/leaflet-providers-plugin-2.0.2/leaflet-providers-plugin.js
docs/articles/basic-tutorial_files/leaflet-providers-plugin-2.0.3/leaflet-providers-plugin.js
docs/articles/basic-tutorial_files/leafletfix-1.0.0/leafletfix.css
docs/articles/basic-tutorial_files/rstudio_leaflet-1.3.1/images/1px.png
docs/articles/basic-tutorial_files/rstudio_leaflet-1.3.1/rstudio_leaflet.css
docs/articles/faq.html
docs/articles/index.html
docs/articles/installation.html
docs/articles/known-issues.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/RMAPI.html
docs/reference/barrier_lines.html
docs/reference/bind_data.html
docs/reference/calc_hex_values.html
docs/reference/calc_intersections.html
docs/reference/check_RMAPI_loaded.html
docs/reference/col_hotcold.html
docs/reference/coords_DRC.html
docs/reference/create_map.html
docs/reference/create_map2.html
docs/reference/fit_model.html
docs/reference/fit_model2.html
docs/reference/get_ellipse.html
docs/reference/get_spatial_distance.html
docs/reference/index.html
docs/reference/is.rmapi_project.html
docs/reference/load_old_data1.html
docs/reference/load_old_data2.html
docs/reference/load_old_data3.html
docs/reference/load_old_data4.html
docs/reference/lonlat_to_bearing.html
docs/reference/overlay_points.html
docs/reference/plot_coverage.html
docs/reference/plot_dist.html
docs/reference/plot_leaflet.html
docs/reference/plot_map.html
docs/reference/plot_map2.html
docs/reference/print_full.html
docs/reference/rmapi_analysis.html
docs/reference/rmapi_file.html
docs/reference/rmapi_project.html
docs/reference/run_sims.html
docs/reference/sim_custom.html
docs/reference/sim_falciparum.html
docs/reference/sim_rect.html
docs/reference/sim_simple.html
index.md
inst/extdata/DRC_inbreeding.rds
inst/extdata/mali_demog.rds
inst/extdata/mapi_sim.rds
man/RMAPI.Rd
man/bind_data.Rd
man/check_RMAPI_loaded.Rd
man/col_hotcold.Rd
man/create_map.Rd
man/create_map2.Rd
man/fit_model.Rd
man/get_ellipse.Rd
man/get_spatial_distance.Rd
man/is.rmapi_project.Rd
man/is.rmapi_sim.Rd
man/lonlat_to_bearing.Rd
man/overlay_points.Rd
man/plot_coverage.Rd
man/plot_daily_states.Rd
man/plot_dist.Rd
man/plot_leaflet.Rd
man/plot_map.Rd
man/print_full.Rd
man/rmapi_analysis.Rd
man/rmapi_file.Rd
man/rmapi_project.Rd
man/sim_falciparum.Rd
man/sim_simple.Rd
src-i386/RcppExports.cpp
src-i386/array.cpp
src-i386/array.h
src-i386/calc_hex_values.cpp
src-i386/calc_intersections.cpp
src-i386/hexbarrier01.cpp
src-i386/main.cpp
src-i386/main.h
src-i386/misc_v4.cpp
src-i386/misc_v4.h
src-i386/probability.cpp
src-i386/probability.h
src-i386/sim.Dispatcher.cpp
src-i386/sim.Dispatcher.h
src-i386/sim.Host.cpp
src-i386/sim.Host.h
src-i386/sim.Mosquito.cpp
src-i386/sim.Mosquito.h
src-i386/sim.Parameters.cpp
src-i386/sim.Parameters.h
src-i386/sim.Sampler.cpp
src-i386/sim.Sampler.h
src/RcppExports.cpp
src/array.cpp
src/array.h
src/calc_hex_values.cpp
src/calc_intersections.cpp
src/hexbarrier01.cpp
src/main.cpp
src/main.h
src/misc_v4.cpp
src/misc_v4.h
src/probability.cpp
src/probability.h
src/sim.Dispatcher.cpp
src/sim.Dispatcher.h
src/sim.Host.cpp
src/sim.Host.h
src/sim.Mosquito.cpp
src/sim.Mosquito.h
src/sim.Parameters.cpp
src/sim.Parameters.h
src/sim.Sampler.cpp
src/sim.Sampler.h
tests/testthat.R
tests/testthat/test-assertions_v5.R
vignettes/.gitignore
vignettes/basic-tutorial.Rmd
vignettes/installation.Rmd