Man pages for mrc-ide/RMAPI
Mapping Averaged Pairwise Information in R
| bind_data | Load data into RMAPI project |
| check_RMAPI_loaded | Check that RMAPI package has loaded successfully |
| col_hotcold | Red to blue colours |
| create_map | Create mapping space |
| create_map2 | Create mapping space |
| fit_model | Fit a simple model to pairwise data |
| get_ellipse | Calculate ellipse polygon coordinates from foci and... |
| get_spatial_distance | Get great circle distance between spatial points |
| is.rmapi_project | Determine if object is of class rmapi_project |
| is.rmapi_sim | Determine if object is of class rmapi_sim |
| lonlat_to_bearing | Calculate great circle distance and bearing between... |
| overlay_points | Add points to dynamic map |
| plot_coverage | Plot hex coverage for a given eccentricity |
| plot_daily_states | Plot daily counts of each host state from simulation |
| plot_dist | Plot pairwise spatial distance against loaded statistic |
| plot_leaflet | Interactive hex map of RMAPI output |
| plot_map | Plot hex map of RMAPI output |
| print_full | Print unclassed object |
| RMAPI | RMAPI |
| rmapi_analysis | Perform RMAPI analysis |
| rmapi_file | Import file |
| rmapi_project | Define empty RMAPI project |
| sim_falciparum | Simulate genetic data from simple P. falciparum dynamic model |
| sim_simple | Simulate data from simple model |
