Files in mrc-ide/drjacoby
Flexible Markov Chain Monte Carlo via Reparameterization
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.github/.gitignore
.github/workflows/coverage.yaml
.github/workflows/develop_build.yaml
.github/workflows/master_build.yaml
.github/workflows/readme_render.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/RcppExports.R
R/assertions_v13.R
R/cpp_template.R
R/data.R
R/diagnostic.R
R/drjacoby.R
R/drjacoby_output.R
R/main.R
R/plot.R
R/samples.R
R/sysdata.rda
README.Rmd
README.md
R_ignore/.DS_Store
R_ignore/deploy.R
R_ignore/images/Sunglasses.png
R_ignore/images/create_hex.R
R_ignore/images/dependence_table.png
R_ignore/images/infographic_coupling.png
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data/population_data.rda
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docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/acf_data.html
docs/reference/check_drjacoby_loaded.html
docs/reference/check_likelihood_compilation.html
docs/reference/check_prior_compilation.html
docs/reference/cpp_function_get.html
docs/reference/cpp_template.html
docs/reference/define_default.html
docs/reference/define_params.html
docs/reference/drjacoby.html
docs/reference/drjacoby_cols.html
docs/reference/drjacoby_file.html
docs/reference/dummy1.html
docs/reference/ess.html
docs/reference/gelman_rubin.html
docs/reference/get_theta_rungs.html
docs/reference/index.html
docs/reference/plot_autocorrelation.html
docs/reference/plot_contour.html
docs/reference/plot_cor.html
docs/reference/plot_cor_mat.html
docs/reference/plot_credible.html
docs/reference/plot_mc_acceptance.html
docs/reference/plot_pairs.html
docs/reference/plot_par.html
docs/reference/plot_rung_loglike.html
docs/reference/plot_scatter.html
docs/reference/plot_trace.html
docs/reference/population_data.html
docs/reference/run_mcmc.html
docs/reference/sample_chains.html
docs/reference/set_rhat.html
docs/sitemap.xml
drjacoby.Rproj
index.md
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/blocks_loglike_logprior.cpp
inst/extdata/checks/doublewell_loglike_logprior.cpp
inst/extdata/checks/multilevel_loglike_logprior.cpp
inst/extdata/checks/normal_loglike_logprior.cpp
inst/extdata/checks/returnprior_loglike_logprior.cpp
inst/extdata/coupling_loglike_logprior.cpp
inst/extdata/example_loglike_logprior.cpp
inst/extdata/getting_model_fits_data.rds
inst/templates/cpp_template.cpp
man/acf_data.Rd
man/check_drjacoby_loaded.Rd
man/cpp_template.Rd
man/define_params.Rd
man/drjacoby.Rd
man/gelman_rubin.Rd
man/plot_autocorrelation.Rd
man/plot_cor_mat.Rd
man/plot_credible.Rd
man/plot_density.Rd
man/plot_mc_acceptance.Rd
man/plot_pairs.Rd
man/plot_rung_loglike.Rd
man/plot_scatter.Rd
man/plot_trace.Rd
man/population_data.Rd
man/run_mcmc.Rd
man/sample_chains.Rd
src/.DS_Store
src/.gitignore
src/Particle.cpp
src/Particle.h
src/RcppExports.cpp
src/System.cpp
src/System.h
src/main.cpp
src/main.h
src/misc.cpp
src/misc.h
tests/.DS_Store
tests/testthat.R
tests/testthat/.DS_Store
tests/testthat/test-Inf_checks_work.R
tests/testthat/test-assertions_v13.R
tests/testthat/test-cpp_template.R
tests/testthat/test-diagnostic.R
tests/testthat/test-mcmc-with-cpp-likelihood-and-prior.R
tests/testthat/test-mcmc-with-r-likelihood-and-prior.R
tests/testthat/test-mcmc-wth-mixed-likelihood-and-prior.R
tests/testthat/test-mcmc_with_multi_function_cpp.R
tests/testthat/test-plot.R
tests/testthat/test_input_files/loglike_logprior.cpp
tests/testthat/test_input_files/multi_loglike_logprior.cpp
vignettes/.gitignore
vignettes/blocks.Rmd
vignettes/checks_double_well.Rmd
vignettes/checks_multilevel_blocks.Rmd
vignettes/checks_normal_model.Rmd
vignettes/checks_return_prior.Rmd
vignettes/example.Rmd
vignettes/getting_model_fits.Rmd
vignettes/installation.Rmd
vignettes/metropolis_coupling.Rmd
vignettes/parallel.Rmd
