Files in mrc-ide/first90release
The first90 model
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
ProgramDataGuidance.md
R/README.md
R/create_fp.R
R/create_hts_param.R
R/eppasm.R
R/extract-pjnz.R
R/first90-package.R
R/inputs.R
R/likelihood.R
R/outputs.R
R/plot_functions.R
R/plot_outputs.R
R/retest.R
R/simul.R
R/sysdata.rda
R/table_output.R
R/time_functions.R
R/time_prb_dx_one_year_cpp.R
README.Rmd
README.md
SurveyDataGuidance.md
data-raw/initial-theta0-values.R
data-raw/shiny90-parameter-estimates-2021.csv
data-raw/theta0-2023.csv
data-raw/theta0-2024.csv
data/theta0.rda
first90release.Rproj
man/add_ss_indices.Rd
man/artcov15to49.Rd
man/calc_asfr.Rd
man/combine_inputs.Rd
man/create_beers.Rd
man/create_hts_param.Rd
man/diagnosed.Rd
man/evertest.Rd
man/exists_dptag.Rd
man/extract_pjnz.Rd
man/figures/README-example-1.jpeg
man/figures/README-example-1.png
man/figures/README-example-10.jpeg
man/figures/README-example-10.png
man/figures/README-example-11.jpeg
man/figures/README-example-11.png
man/figures/README-example-12.jpeg
man/figures/README-example-12.png
man/figures/README-example-13.jpeg
man/figures/README-example-13.png
man/figures/README-example-14.jpeg
man/figures/README-example-14.png
man/figures/README-example-15.jpeg
man/figures/README-example-15.png
man/figures/README-example-16.jpeg
man/figures/README-example-16.png
man/figures/README-example-2.jpeg
man/figures/README-example-2.png
man/figures/README-example-3.jpeg
man/figures/README-example-3.png
man/figures/README-example-4.jpeg
man/figures/README-example-4.png
man/figures/README-example-5.jpeg
man/figures/README-example-5.png
man/figures/README-example-6.jpeg
man/figures/README-example-6.png
man/figures/README-example-7.jpeg
man/figures/README-example-7.png
man/figures/README-example-8.jpeg
man/figures/README-example-8.png
man/figures/README-example-9.jpeg
man/figures/README-example-9.png
man/figures/README-unnamed-chunk-1-1.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-2-2.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-3-2.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-5-2.png
man/get_dp_Sx.Rd
man/get_dp_frr.Rd
man/get_dp_srb.Rd
man/get_dp_tfr.Rd
man/get_dp_totpop.Rd
man/get_pjn_country.Rd
man/get_pjn_region.Rd
man/number_diagnoses.Rd
man/number_retests.Rd
man/number_tests.Rd
man/prepare_inputs.Rd
man/prepare_inputs_from_extracts.Rd
man/select_hts.Rd
man/select_prgmdata.Rd
man/simmod.Rd
man/spectrum_output_table.Rd
man/svy_hts_interface.Rd
src/.gitignore
src/eppasm.cpp
src/evertest.c
src/number_tests.c
tests/testthat.R
tests/testthat/helper_pjn_data.R
tests/testthat/test-pjn-data.R
tests/testthat/test-plot-input-anc.R
tests/testthat/test-plot-input-tot.R
tests/testthat/test-plot-totpos.R
tests/testthat/test-simmod.R
tests/testthat/testdata/sao_tome_test.pjn.csv
