Man pages for mrc-ide/first90release
The first90 model
| add_ss_indices | Add incidences corresponding to state space |
| artcov15to49 | ART coverage among age 15-49 |
| calc_asfr | Calculate ASFR from TFR and fertility distribution |
| combine_inputs | Combine PJNZ inputs |
| create_beers | Beers coefficients to distribute from 5-year to single-year... |
| create_hts_param | Create HIV testing rates from parameter inputs |
| diagnosed | Proportion diagnosed among HIV+ by age, sex, or HIV status |
| evertest | Proportion ever tested by age, sex, or HIV status |
| exists_dptag | Internal helper functions |
| extract_pjnz | Extract outputs from PJNZ needed for first90 model |
| get_dp_frr | Extract AIM module parameters |
| get_dp_srb | Get sex ratio at birth |
| get_dp_Sx | Get mortality probability (Sx) from Spectrum DP file |
| get_dp_tfr | Get age-specific fertility rate by single-year |
| get_dp_totpop | Extract arrays from Spectrum DP file |
| get_pjn_country | Get country name from parsed PJN |
| get_pjn_region | Get subnational region from parsed PJN |
| number_diagnoses | Number of new diagnoses by age and sex |
| number_retests | Calculate number adn proportion of retests conducted or... |
| number_tests | Calculate number of tests conducted or number tested by year |
| prepare_inputs | Create model inputs from Spectrum PJNZ |
| prepare_inputs_from_extracts | Create model inputs from aggregated Spectrum PJNZ |
| select_hts | Process survey data on hiv testing behaviors |
| select_prgmdata | Process programmatic data on number of tests |
| simmod | Simulate EPP-ASM model |
| spectrum_output_table | Table to write CSV outputs for Spectrum |
| svy_hts_interface | Function to present the survey data on shinny interface |
