Files in mrc-ide/global-lmic-results
Analysis of LMIC COVID-19 results
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENCE
NAMESPACE
R/data_incoming.R
R/reports.R
README.Rmd
README.md
analysis/00_cleaning_data_prep/prepping_shapefile_for_plots.R
analysis/01_brt_r0_start_dates_and_attack_rates/01a_brt.R
analysis/01_brt_r0_start_dates_and_attack_rates/01b_example_fits.R
analysis/01_brt_r0_start_dates_and_attack_rates/01c_r0_start_date_maps.R
analysis/01_brt_r0_start_dates_and_attack_rates/01d_attack_rates.R
analysis/01_epidemic_tracectories_and_counterfactuals/figure_1_all_panels.R
analysis/01_epidemic_tracectories_and_counterfactuals/functions.R
analysis/02_inferred_deaths_averted/02a_inferred_deaths_averted.R
analysis/03_meff_transmissibility/03d_basic_pca_kmeans.R
analysis/data/intervention_data/lockdown_timing_ACAPs_derived.csv
analysis/data/map_plot_data/start_R0_Meff_date.csv
analysis/data/raw_data/server_results/archive/brt_google_mobility/20200602-002850-6baa471e/World_Bank_Country_Metadata.csv
analysis/data/raw_data/server_results/archive/brt_google_mobility/20200602-002850-6baa471e/google_brt.rds
analysis/data/raw_data/server_results/archive/brt_google_mobility/20200602-002850-6baa471e/google_brt_model.rds
analysis/data/raw_data/server_results/archive/brt_google_mobility/20200602-002850-6baa471e/orderly.log
analysis/data/raw_data/server_results/archive/brt_google_mobility/20200602-002850-6baa471e/orderly.yml
analysis/data/raw_data/server_results/archive/brt_google_mobility/20200602-002850-6baa471e/orderly_run.rds
analysis/data/raw_data/server_results/archive/brt_google_mobility/20200602-002850-6baa471e/script.R
analysis/data/raw_data/server_results/archive/ecdc/20200602-002838-e66b19c1/README.md
analysis/data/raw_data/server_results/archive/ecdc/20200602-002838-e66b19c1/ecdc.xlsx
analysis/data/raw_data/server_results/archive/ecdc/20200602-002838-e66b19c1/ecdc_all.rds
analysis/data/raw_data/server_results/archive/ecdc/20200602-002838-e66b19c1/orderly.log
analysis/data/raw_data/server_results/archive/ecdc/20200602-002838-e66b19c1/orderly.yml
analysis/data/raw_data/server_results/archive/ecdc/20200602-002838-e66b19c1/orderly_run.rds
analysis/data/raw_data/server_results/archive/ecdc/20200602-002838-e66b19c1/script.R
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3e202a25/fitting.pdf
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3e202a25/grid_out.rds
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3e202a25/orderly_run.rds
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3e202a25/projections.csv
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3f329f2c/fitting.pdf
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3f329f2c/grid_out.rds
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3f329f2c/orderly_run.rds
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-3f329f2c/projections.csv
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-4c831493/fitting.pdf
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-4c831493/grid_out.rds
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-4c831493/orderly_run.rds
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-4c831493/projections.csv
analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-4f16bef9/fitting.pdf
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analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-4f276a5e/projections.csv
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analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-5b4ee5ab/projections.csv
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analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-5d5ec3c7/projections.csv
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analysis/data/raw_data/server_results/archive/lmic_reports_google/20200602-010113-5e4841f9/grid_out.rds
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