Files in mrc-ide/individual
Framework for Specifying and Simulating Individual Based Models
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yml
.github/workflows/test_coverage.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/bitset.R
R/catch-routine-registration.R
R/categorical_variable.R
R/double_variable.R
R/event.R
R/individual-package.R
R/integer_variable.R
R/prefab.R
R/ragged_double.R
R/ragged_integer.R
R/render.R
R/simulation.R
R/targeted_event.R
R/utils.R
README.md
_pkgdown.yml
codecov.yml
docker/Dockerfile
docker/Dockerfile.ci
docker/Dockerfile.dev
inst/CITATION
inst/include/CategoricalVariable.h
inst/include/DoubleVariable.h
inst/include/Event.h
inst/include/IntegerVariable.h
inst/include/IterableBitset.h
inst/include/Log.h
inst/include/NumericVariable.h
inst/include/RaggedDouble.h
inst/include/RaggedInteger.h
inst/include/RaggedVariable.h
inst/include/RenderVector.h
inst/include/Variable.h
inst/include/common_types.h
inst/include/individual.h
inst/include/individual_RcppExports.h
inst/include/individual_types.h
inst/include/utils.h
inst/include/vector_variables.h
joss/paper.bib
joss/paper.md
joss/sim_loop.png
joss/sir.png
man/Bitset.Rd
man/CategoricalVariable.Rd
man/DoubleVariable.Rd
man/Event.Rd
man/EventBase.Rd
man/IntegerVariable.Rd
man/RaggedDouble.Rd
man/RaggedInteger.Rd
man/Render.Rd
man/TargetedEvent.Rd
man/bernoulli_process.Rd
man/categorical_count_renderer_process.Rd
man/figures/logo.png
man/filter_bitset.Rd
man/fixed_probability_multinomial_process.Rd
man/infection_age_process.Rd
man/multi_probability_bernoulli_process.Rd
man/multi_probability_multinomial_process.Rd
man/reschedule_listener.Rd
man/restore_object_state.Rd
man/restore_simulation_state.Rd
man/save_object_state.Rd
man/save_simulation_state.Rd
man/simulation_loop.Rd
man/update_category_listener.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/Log.cpp
src/Makevars
src/RcppExports.cpp
src/bitset.cpp
src/categorical_variable.cpp
src/cpp_interface.cpp
src/double_variable.cpp
src/event.cpp
src/integer_variable.cpp
src/prefab.cpp
src/ragged_double.cpp
src/ragged_integer.cpp
src/render_vector.cpp
src/simulation.cpp
src/test-bitset.cpp
src/test-runner.cpp
src/utils.h
src/variable.cpp
tests/performance/bench-bitset.R
tests/performance/bench-categoricalvariable.R
tests/performance/bench-doublevariable.R
tests/performance/bench-integervariable.R
tests/performance/bench-render.R
tests/performance/benchmark.sh
tests/performance/state_index_benchmark.cpp
tests/performance/utils.R
tests/testthat.R
tests/testthat/helper-targetedevent.R
tests/testthat/test-bitset.R
tests/testthat/test-categoricalvariable-resize.R
tests/testthat/test-categoricalvariable-update.R
tests/testthat/test-categoricalvariable.R
tests/testthat/test-checkpoint.R
tests/testthat/test-cpp.R
tests/testthat/test-doublevariable-resize.R
tests/testthat/test-doublevariable-update.R
tests/testthat/test-doublevariable.R
tests/testthat/test-events.R
tests/testthat/test-integervariable-resize.R
tests/testthat/test-integervariable-update.R
tests/testthat/test-integervariable.R
tests/testthat/test-prefab.R
tests/testthat/test-raggeddouble-resize.R
tests/testthat/test-raggeddouble-update.R
tests/testthat/test-raggeddouble.R
tests/testthat/test-raggedinteger-resize.R
tests/testthat/test-raggedinteger-update.R
tests/testthat/test-raggedinteger.R
tests/testthat/test-render.R
tests/testthat/test-simulation-e2e.R
tests/testthat/test-targetedevent-resize.R
tests/testthat/test-targetedevent.R
vignettes/.gitignore
vignettes/API.Rmd
vignettes/Changing_Populations.Rmd
vignettes/Checkpoint.Rmd
vignettes/Contributing.Rmd
vignettes/Performance.Rmd
vignettes/Tutorial.Rmd
vignettes/sim_loop.png
