Files in mrc-ide/rtss_impact_cea_2021
Update of analysis from Penny et al 2015
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/conversion.R
R/main_figure.R
R/post_processing.R
R/run.R
R/set_up.R
R/table.R
R/tornado_figure.R
R/utils-pipe.R
README.Rmd
README.md
analysis/01_model_runs.R
analysis/02_post_processing.R
analysis/03_internal_results.R
analysis/04_combined_results.R
analysis/combined_output/Linear_scaling.png
analysis/combined_output/Linear_scaling.pptx
analysis/combined_output/ce_compare.png
analysis/combined_output/cea_comparsion.csv
analysis/combined_output/figure_high_coverage.png
analysis/combined_output/figure_low_coverage.png
analysis/combined_output/figure_max_cod.png
analysis/combined_output/figure_min_cod.png
analysis/combined_output/main_figure.png
analysis/combined_output/main_figure_zoomed.png
analysis/combined_output/main_table.csv
analysis/combined_output/main_table_high_coverage.csv
analysis/combined_output/main_table_low_coverage.csv
analysis/combined_output/main_table_max_cod.csv
analysis/combined_output/main_table_min_cod.csv
analysis/combined_output/table_comparison.csv
analysis/combined_output/tornado_plot.png
analysis/data/raw_data/imperial_2015.rds
analysis/data/raw_data/life_expectancy.csv
analysis/data/raw_data/penny_et_al_table2.csv
analysis/output/imperial_impact_estimate_2021.csv
analysis/plots/Comparison.png
analysis/plots/cost_per_case_daly_averted.png
analysis/plots/impact_age_plot.png
analysis/plots/impact_plot.png
man/calibration_output_vars.Rd
man/create_site.Rd
man/dalys.Rd
man/life_expectancy.Rd
man/model_output_to_long.Rd
man/model_run.Rd
man/mortality_rate.Rd
man/output_vars.Rd
man/pfpr_levels.Rd
man/pipe.Rd
man/replace_missing.Rd
man/rtss_coverage.Rd
man/seasonality.Rd
man/total_m_guess.Rd
man/treatment_option.Rd
man/uncertainty_draws.Rd
man/vaccine_options.Rd
man/vectors.Rd
man/year_summary.Rd
rtss_impact_cea_2021.Rproj
