Man pages for mrc-ide/rtss_impact_cea_2021
Update of analysis from Penny et al 2015
| calibration_output_vars | Define output variables for calibration runs |
| create_site | Create a site file |
| dalys | Estimate DALYs |
| life_expectancy | Join life expectancy |
| model_output_to_long | Raw output to long |
| model_run | Run the model |
| mortality_rate | Add mortality rate (dependent on severe case incidence and... |
| output_vars | Define output variables |
| pfpr_levels | PfPr levels |
| pipe | Pipe operator |
| replace_missing | Replaces -999 values in outputs |
| rtss_coverage | RTS,S coverage options |
| seasonality | Define seasonal profiles |
| total_m_guess | Total_M guess |
| treatment_option | Treatment options |
| uncertainty_draws | Uncertainty draws |
| vaccine_options | Vaccine options |
| vectors | Vector species proportions |
| year_summary | Isolate annual summary |
